Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J24
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   1.5  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   2.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   6.0  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.0  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -1

Query: 469 MYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKIPRF--QISTNLVLNKPLND 320
           +Y+N   +  K  F     + D FGLE  +  +P     + ++  L  P ND
Sbjct: 297 VYENSGHLPSKSHFSSTDSNTDSFGLESDERSLPSVSNDLKSSETLKNPRND 348


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -1

Query: 487 NVKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKI-----PRFQISTNLVLNKPLN 323
           N K    Y+ F   SL D  K L   +    + ++         P  QI  +LVLNKP++
Sbjct: 490 NEKAPRFYRRFILRSLVDRLKSLYPKLALSQMSQLVKNFYAFEDPLLQIEKSLVLNKPIH 549

Query: 322 DMG 314
            +G
Sbjct: 550 QIG 552


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +3

Query: 168 EKVAEVEADAIVPDSVTSISALCTIAETNIFSLVTRWKLATSGWNISYTPISFKGLFRTR 347
           +K  ++  D IV +    I  +     T+   ++  WK ATS W+   + +   G  R  
Sbjct: 760 QKTLDLTLDPIVKEQ--DIYLILVTLSTHKNGVLAMWKFATSNWDKLLSRLPVAGTMRGY 817

Query: 348 LV 353
           +V
Sbjct: 818 VV 819


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 139 ANRPFVYFVMEKSTLTVLFSGIYSK 65
           AN P ++ + E++TL+   SG+Y K
Sbjct: 214 ANDPLLFNLTEQNTLSYELSGLYEK 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,581
Number of Sequences: 5004
Number of extensions: 40478
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)