Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J24
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 53 1e-07
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 49 3e-06
11_02_0011 - 7337618-7338496,7338596-7338991 48 4e-06
11_01_0771 + 6453130-6454488 47 9e-06
11_01_0750 - 6315126-6315896,6316371-6316784 46 3e-05
01_01_1152 + 9170628-9171899 44 7e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 42 3e-04
01_06_0824 - 32243495-32244319,32244449-32244859 38 0.004
04_04_0619 + 26652923-26653267,26653440-26654273 36 0.017
04_04_0620 + 26656072-26656417,26656585-26657396 36 0.030
05_06_0044 - 25150322-25151260 34 0.070
11_01_0302 + 2261489-2261738,2261917-2262064,2262124-2262205,226... 31 0.49
11_01_0767 + 6438648-6438809,6439146-6440000 31 0.86
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 28 6.1
02_04_0559 + 23869791-23869907,23869993-23872131,23872235-238723... 28 6.1
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Frame = -1
Query: 382 DVKIPRFQISTNLVLNKPLNDMGV---YDIFQPDVASFQRVTKENIFVSAIVHKADIEV- 215
D+++PRF++S +N+ L MG+ +D+ + D++ + E + V ++H+A +EV
Sbjct: 289 DLRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGM--IDGELVVVEKVMHRAVVEVN 346
Query: 214 ---TEXXXXXXXXXXXXXSDRISAPNFHANRPFVYFVMEKSTLTVLFSGIYSKPT 59
TE S +F A+ PF +FV+E+ + VLF+G PT
Sbjct: 347 EEGTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDPT 401
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Frame = -1
Query: 376 KIPRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRVTK---ENIFVSAIVHKADIEVTEX 206
K+P+F+IS + L +G++ F + + V +N+FVS++ HK+ +EV E
Sbjct: 355 KLPKFKISFGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEE 414
Query: 205 XXXXXXXXXXXXSDRIS--APNFHANRPFVYFVMEKSTLTVLFSG 77
+ R + A +F A+ PF++ + E T VLF G
Sbjct: 415 GTEAAAATAAVITLRSAPIAEDFVADHPFLFLIQEDMTGVVLFVG 459
Score = 48.8 bits (111), Expect = 3e-06
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Frame = -1
Query: 541 IPYATDG---KYSMLFVIPYGNVKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKI 371
+PY G ++SM ++P + QD + AE L + +++ + + K+
Sbjct: 554 LPYLQGGDKRQFSMYILLP----EAQDGLWSLAE-KLNSEPEFMENHIPMRPVHVGQFKL 608
Query: 370 PRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRVTK---ENIFVSAIVHKADIEVT-EXX 203
P+F+IS + L +G+ +F +V + V +N+FVS++ HK+ IEV E
Sbjct: 609 PKFKISFGFGASGLLKGLGLPLLFGSEVDLIEMVDSPGAQNLFVSSVFHKSFIEVNEEGT 668
Query: 202 XXXXXXXXXXXSDRISAPNFHANRPFVYFVMEKSTLTVLFSGIYSKP 62
R NF A+ PF++ + E T +LF G P
Sbjct: 669 EATAAVMVSMEHSRPRRLNFVADHPFMFLIREDVTGVILFIGHVVNP 715
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 48.4 bits (110), Expect = 4e-06
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Frame = -1
Query: 382 DVKIPRFQISTNLVLNKPLNDMGV---YDIFQPDVASFQRVTKEN---IFVSAIVHKADI 221
D+++PRF++S +N L MGV +D + D++ + + V + H+A +
Sbjct: 305 DLRVPRFKVSFYSQINGVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVV 364
Query: 220 EVTEXXXXXXXXXX-XXXSDRISAP-NFHANRPFVYFVMEKSTLTVLFSGIYSKPT 59
EV E +S P +F A+ PF +FV+E+++ VLF+G PT
Sbjct: 365 EVNEEGTEAAASTACTIRLLSMSYPEDFVADHPFAFFVVEETSGAVLFAGHVLDPT 420
>11_01_0771 + 6453130-6454488
Length = 452
Score = 47.2 bits (107), Expect = 9e-06
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Frame = -1
Query: 382 DVKIPRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRVTKEN-----IFVSAIVHKADIE 218
+ ++P+F++S + L +G+ F P++A + +++ +FV I HKA IE
Sbjct: 335 EFRVPKFKVSCGGSVVGALEQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIE 394
Query: 217 VTEXXXXXXXXXXXXXSDRISAP---NFHANRPFVYFVMEKSTLTVLFSGIYSKPTV 56
V E P +F A PF YF++E+ + V+F+G P++
Sbjct: 395 VNEEGTVAAAATMTRMLPSGVPPPPVDFVAEHPFAYFIVEEMSSAVVFAGHIVDPSM 451
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Frame = -1
Query: 385 IDVKIPRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRVTKEN-----IFVSAIVHKADI 221
+ + +P F+IS + + L DMG+ F + A F + KE+ +F+S ++HKA +
Sbjct: 280 VGISVPNFKISFQIDVKDFLKDMGLELPFLRE-AEFSDMIKEDDSSGPLFLSDVLHKAVL 338
Query: 220 EVTEXXXXXXXXXXXXXSDRISAPNFHANRPFVYFVMEKSTLTVLFSGIYSKPT 59
EV + + A +F A+ PF + + E+ + TV+F G P+
Sbjct: 339 EVDQKGIEETSVSMGLGKP-LPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPS 391
>01_01_1152 + 9170628-9171899
Length = 423
Score = 44.4 bits (100), Expect = 7e-05
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)
Frame = -1
Query: 517 YSMLFVIPYGN--VKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKIPRFQISTNL 344
+ ML ++P G+ +K+ D+Y V+ + KK + + +P+F+ S
Sbjct: 269 FYMLLLLPDGDGALKLADLYD--MAVTTPEFIKKHTPAAEA---PVRRLMVPKFKFSFKF 323
Query: 343 VLNKPLNDMGVYDIFQPDVASFQRVTKENIFVSAIVHKADIEVTEXXXXXXXXXXXXXSD 164
+ +GV F S + +F++ + H+A IEV E
Sbjct: 324 EAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVAAASTAVVMMQ 383
Query: 163 RISA---PNFHANRPFVYFVMEKSTLTVLFSGIYSKP 62
+ S+ +F A+RPF++ V+E+ T VLF G P
Sbjct: 384 KGSSLPPVDFVADRPFLFAVVEELTGAVLFLGHVVNP 420
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Frame = -1
Query: 376 KIPRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRV---TKENIFVSAIVHKADIEVTEX 206
K+P+F+IS + L +G+ F V + N+FVS++ HK+ ++V E
Sbjct: 147 KLPKFKISFGFEASDLLKILGLQLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDEE 206
Query: 205 XXXXXXXXXXXXSDRISAP---NFHANRPFVYFVMEKSTLTVLFSGIYSKP 62
S R SAP +F A+ PF++ + E T VLF G P
Sbjct: 207 GTEAAAASAAVVSFR-SAPVTVDFVADHPFLFLIREDMTGVVLFIGHVVNP 256
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Frame = -1
Query: 373 IPRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRVTK-----ENIFVSAIVHKADIEVTE 209
+PRF +S + L +G+ F+ A + + E I VSA+ H++ +EV E
Sbjct: 292 VPRFTLSYKTNAAETLRQLGLRLPFEYPGADLSEMVESSPEAEKIVVSAVYHESFVEVNE 351
Query: 208 XXXXXXXXXXXXXSDRISAPN-------FHANRPFVYFVMEKSTLTVLFSGIYSKPT 59
+ +AP+ F A+ PF++ + E T V+F+G + P+
Sbjct: 352 EGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLIKEDLTGVVVFAGQVTNPS 408
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 36.3 bits (80), Expect = 0.017
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Frame = -1
Query: 373 IPRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRVT------KENIFVSAIVHKADIEVT 212
+P+F+ S+ L L +G+ F P A R+ E ++VSA+ K +EV
Sbjct: 271 VPKFKFSSELDARGALAKLGLGAPFDPLAADLSRMAVSVNTPPERLYVSAMRQKCAVEVD 330
Query: 211 EXXXXXXXXXXXXXSDRISAP--------NFHANRPFVYFVMEKSTLTVLFSGIYSKPT 59
E S S P +F A PF++ ++E VLF G P+
Sbjct: 331 EEGTTAVEATYSCCSPTYSGPESPKPRPMSFVAEHPFMFAIVEYEKAQVLFLGHVMDPS 389
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 35.5 bits (78), Expect = 0.030
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Frame = -1
Query: 376 KIPRFQISTNLVLNKPLNDMGVYDIFQPDVASFQRVT----KENIFVSAIVHKADIEVTE 209
K+P+F+ S+ L L +G+ F PD A R+ ++VS + K +EV E
Sbjct: 263 KVPKFKFSSQLDAGGALAQLGLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQKCAVEVDE 322
Query: 208 XXXXXXXXXXXXXS---------DRISAPNFHANRPFVYFVMEKSTLTVLFSGIYSKPT 59
S R +F A PF++ ++E VLF G P+
Sbjct: 323 EGTTAVEAMYSPSSPGYSPGYQPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDPS 381
>05_06_0044 - 25150322-25151260
Length = 312
Score = 34.3 bits (75), Expect = 0.070
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Frame = -1
Query: 382 DVKIPRFQISTNLVLNKPLNDMGVYDIFQPDVA-SFQRVT---KENIFVSAIVHKADIEV 215
++KIP+F++S + ++ L + G+ F P SF + + VS+++H+ + V
Sbjct: 195 ELKIPKFEVSLKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNV 254
Query: 214 TEXXXXXXXXXXXXXSDRISAPN-----FHANRPFVYFVMEKSTLTVLFSGIYSKP 62
E + P+ F A+ PF++F++E+ + V+F+G P
Sbjct: 255 NEEGTVAAAGTVGEIMG-FAMPDDQIVDFVADHPFLFFIVEEVSGLVVFAGQVVNP 309
>11_01_0302 +
2261489-2261738,2261917-2262064,2262124-2262205,
2262501-2262566,2262609-2262686,2262794-2262808,
2263618-2263764
Length = 261
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = -2
Query: 561 LKAFALEYLMRRTANIQCCL*YLMETLKFKTCIKTLPKSA*KIYLKSYRTTLINSDWKRL 382
LK ++L+ +I L + +F T + TLP + +++SY ++ + S W +
Sbjct: 177 LKICGQDWLLLVNCHIITSLMLFLSPSRFVTALSTLPATC--DFVQSYDSSDVKSQWHEI 234
Query: 381 MLRYRDS 361
LR+ D+
Sbjct: 235 RLRFADN 241
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 30.7 bits (66), Expect = 0.86
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Frame = -1
Query: 256 IFVSAIVHKADIEVTEXXXXXXXXXXXXXSDR--------ISAP----NFHANRPFVYFV 113
+FVS+++HK +EV E D + P +F A+ PF +F+
Sbjct: 258 MFVSSVIHKVVVEVNEEGSEAAAYTEESDDDLGCSLYDDDYTPPPKLVDFVADHPFAFFI 317
Query: 112 MEKSTLTVLFSGIYSKPT 59
+E+ + ++F+G P+
Sbjct: 318 VEERSQAIVFAGHVLDPS 335
>09_02_0077 +
3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +3
Query: 135 FAWKFGAEILSEKVAEVEADAIVPDSVTSISALC--TIAETNI--FSLVTRWKLATSGW 299
F W+FG + LS +A +AD IV S+ ++ A ++ +++I SL ++ + GW
Sbjct: 28 FVWEFGKQHLSSLLASTDAD-IVEGSLETLRAFVNKSVGKSSIRSASLTSKLFAFSQGW 85
>02_04_0559 +
23869791-23869907,23869993-23872131,23872235-23872336,
23872720-23872773,23872804-23872899
Length = 835
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 489 ETLKFKTCIKTLPKSA*KIYLKSYRTTLINSDWKRLMLRY 370
E LK KT+ K+ K+ S + + +DWK+++L +
Sbjct: 378 ENLKAHAEFKTIKKALKKVTYGSLKASEFEADWKKIILEH 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,418
Number of Sequences: 37544
Number of extensions: 212056
Number of successful extensions: 529
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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