Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J24
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      67   8e-12
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      67   1e-11
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      65   3e-11
SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)                    29   2.0  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   4.7  
SB_55299| Best HMM Match : DUF1665 (HMM E-Value=5.9)                   27   8.2  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_8629| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
 Frame = -1

Query: 541 IPYATDGKYSMLFVIPYGNVKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKIPRF 362
           +PYA + K SM+ ++P     +  +  +  + +L++    L++       EE++V +P+F
Sbjct: 220 LPYAGE-KLSMVVLLPNEVDGLGKLESSLNKETLQEAMTSLRNSHP----EEVEVTLPKF 274

Query: 361 QISTNLVLNKPLNDMGVYDIFQPDVASFQRVTKENIFVSAIVHKADIEVTE--XXXXXXX 188
            ++    L + L  MG  D+F P  A    ++   + VS +VHKA +EV E         
Sbjct: 275 TLTQEFSLGETLKGMGASDLFSPGKADLSGISAAPLVVSEVVHKAFVEVNEEGTIAAAAT 334

Query: 187 XXXXXXSDRISAPNFHANRPFVYFVMEKSTLTVLFSG 77
                       P F+AN PF++ +    T  VLF G
Sbjct: 335 GVGIMLMSMPMNPVFYANHPFLFLIRHNDTGAVLFMG 371


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
 Frame = -1

Query: 541 IPYATDGKYSMLFVIPYGNVKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKIPRF 362
           +PY+ D   +M+ ++P     I  + K+  +V + + +++L  +        ++V IP+F
Sbjct: 190 LPYSGDDT-AMVIILPEEPSGIFSLEKSI-DVEIMEKWRRLMINTT------VEVSIPKF 241

Query: 361 QISTNLVLNKPLNDMGVYDIFQPDVASFQRVT-KENIFVSAIVHKADIEVTEXXXXXXXX 185
           ++S  L L   L D+GV DIF    A    ++  + ++VS+ +HKA IEV E        
Sbjct: 242 RLSQKLELRSLLQDLGVSDIFDSRKADLSGISAAKGLYVSSAIHKAHIEVNERGTVAAAT 301

Query: 184 XXXXXSDRISAPN--FHANRPFVYFVMEKSTLTVLFSGIYSKPT 59
                + R    N  F+A+ PF++ +  K +  +LF G   +PT
Sbjct: 302 TGVVMAKRSLDMNEVFYADHPFLFSIHHKPSSAILFLGKVMQPT 345


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
 Frame = -1

Query: 541 IPYATDGKYSMLFVIPYGNVKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKIPRF 362
           +PY  D + SM+ V+P     +    ++     + DIF  +          +++V IP+F
Sbjct: 183 LPYV-DTQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNSVSSQRPA----DVEVYIPKF 237

Query: 361 QISTNLVLNKPLNDMGVYDIFQPDVASFQRVT--KENIFVSAIVHKADIEVTEXXXXXXX 188
           ++++   LN+ L ++G+  +F    A F  ++   E++FVSA++HKA +EV E       
Sbjct: 238 KMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTEAAA 297

Query: 187 XXXXXXSDRISAPN----FHANRPFVYFVMEKSTLTVLFSGIYSKP 62
                   R +       F A+ PF++ +    +  VLF G    P
Sbjct: 298 ATAAIMMMRCAIMREPLVFRADHPFLFLIQHCKSKCVLFMGRVMNP 343


>SB_53452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +3

Query: 60  VGFE*IPLNNTVSVDFSITK*TKGRFAWKFGAEILSEKVAEVEADAIVPDSVTSISALCT 239
           + +E + L + +S  F+     +G   WK  AE L+ + ++ ++ +  PD VTS+    T
Sbjct: 1   MAWETVTLLSYLSHGFTGNSAVEGNITWKL-AEFLTFQSSQSQSGSKSPDQVTSLGNEVT 59

Query: 240 IAETNIFS 263
           I  T + S
Sbjct: 60  IKFTGVTS 67


>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
          Length = 646

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -1

Query: 511 MLFVIPYGNVKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEID--VKIPRFQISTNLVL 338
           +L+++ + +  I    K+ A ++L +    LQD++D    EE+   +++P  Q   N + 
Sbjct: 297 VLYMLRFSDYDIYTGKKSIAHLTLVEFESWLQDELDNRTSEELTGLIRVPTKQHKDNAL- 355

Query: 337 NKPLNDMGVYDIFQPDVASFQRVTKENIFV 248
              L       +F+P   +FQ  TK+N F+
Sbjct: 356 --ELVVTTKLLLFEPVRRAFQLDTKDNSFL 383


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +3

Query: 234 CTIAETNIFSLVTRWKLATSGWNISYTPISFKGLFR 341
           C I+ T   +++T + ++ +GW  + TP+ ++  +R
Sbjct: 607 CHISPTTGLAMITSFNMSCTGWQDNETPLEYQFRYR 642


>SB_55299| Best HMM Match : DUF1665 (HMM E-Value=5.9)
          Length = 207

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 523 GKYSMLFVIPYGNVKIQDMYKNFAEVSLKDIFKKLQDDVDKFGLEEIDVKIPRFQISTNL 344
           G YSM    P    + + + K F +  L+ + K L  D +KF L+E+ V   RF+I    
Sbjct: 138 GDYSMSKKNPAKRERSKKIQKVFEKNDLQAL-KSLMTD-EKFWLDEVGVDKNRFEIRKKA 195

Query: 343 VL 338
           VL
Sbjct: 196 VL 197


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 435  IYLKSYRTTLINSDWKR-LMLRYRDSR*VLI 346
            I +K+YRTT I   W + LM R R S  +LI
Sbjct: 1750 ILIKNYRTTSIKLPWSQSLMFRTRKSLGILI 1780


>SB_8629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 INLFQSEFI-NVVL*LFKYIFQADFGKVFIHVLNFNVSIRYYKQH*IFA 523
           I L  S F+ N+VL  F Y F    G   I++ +  V   Y+K+  + A
Sbjct: 125 IGLVSSSFVSNIVLLYFTYGFMNGIGSNLIYISSMMVPALYFKRRRMLA 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,554
Number of Sequences: 59808
Number of extensions: 275670
Number of successful extensions: 589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)