Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J23
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   1.8  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    24   2.3  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    24   3.1  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    23   4.1  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    23   4.1  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    23   5.4  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    23   7.1  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    23   7.1  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    22   9.4  

>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 67  ECQKGEQYNVLRHYVSKRVSC 5
           +C+K ++  +LRH+ S  + C
Sbjct: 108 DCKKRDENGLLRHFESPHIQC 128


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 86  KRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSRDY 238
           + + +  ++ +  R GFD S   NW        GR T      N   ++DY
Sbjct: 427 REYLKKTILTDFMRFGFDGSGADNWFDAGSCIDGRLTSAWNWANNIHTKDY 477


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 110 VQELRRQGF--DESLMSNWVCLVENESGRFTDKIGKVNKNG 226
           V + R++ +  DE+L    +  +  +SG F   + K+ +NG
Sbjct: 20  VSDTRKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRNG 60


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 173 ENESGRFTDKIGKVNKNGSRD 235
           ENE   FT KIG +N     D
Sbjct: 445 ENEDVDFTGKIGAINNEDESD 465


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 137 DESLMSNWVCLVENESGRFTDKIG 208
           D S +    CL+ N SG  TD+ G
Sbjct: 194 DASALEKKSCLLPNSSGTLTDQRG 217


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 85  RIAMQSECQKGEQYNVLRHYVSKRVSC 5
           R+ ++   Q+ +  NVLR Y+ + V+C
Sbjct: 247 RLIIKGRFQQKQIENVLRRYIVEYVTC 273


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 101 CGLVQELRRQGFDES 145
           C +V  +RR GF ES
Sbjct: 610 CAIVNRMRRSGFAES 624


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 113 QELRRQGFDESLMSNWV 163
           ++L + GFDE+ +SN+V
Sbjct: 276 RKLTKGGFDENFVSNYV 292


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 105 PHLVKRFASQCKASAKRASNITY 37
           P  VK FAS C    K    +TY
Sbjct: 29  PKTVKNFASLCNGFEKDGRCLTY 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 889,401
Number of Sequences: 5004
Number of extensions: 12749
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)