Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J23
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201...    27   2.8  
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021...    27   2.8  
11_06_0708 + 26475306-26478404                                         26   3.7  
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     26   3.7  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    26   4.9  
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    26   4.9  
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340           25   6.5  

>08_02_1130 +
           24517319-24518149,24519374-24519868,24519954-24520179,
           24520267-24520291,24520925-24521234,24521328-24521888
          Length = 815

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 107 LVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNG 226
           L  +LR  G   +L   W C VE +   F   +G   KNG
Sbjct: 352 LCHKLRSMG---ALRDTWHCTVEEQIAMFLTTVGHHKKNG 388


>02_04_0367 +
           22399785-22399899,22400911-22401102,22401990-22402117,
           22402229-22402384,22402948-22403206,22403762-22403836,
           22404288-22404610,22405041-22405274,22405355-22405542,
           22405734-22405869,22405963-22406071,22406988-22407090,
           22407188-22407374,22407467-22407565,22407666-22407724,
           22408581-22408686,22408798-22408962
          Length = 877

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 179 RSRQGRPSYSSNFHRSLVF*APALIRIW*NVSHRNAKR 66
           R+ +  P +S  F   +VF A + I +W + SHR+  +
Sbjct: 587 RANKRDPQFSKLFFVQVVFVAISSIMVWISTSHRSQNK 624


>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 98  RCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSR 232
           RC  + ++ R+G ++S + NW+  +++      D I  V+  GS+
Sbjct: 45  RC-FISDVERRGMEDSSIHNWISRLKDAMYDADDIIDLVSFEGSK 88


>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 98  RCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSR 232
           RC  + ++ R+G ++S + NW+  +++      D I  V+  GS+
Sbjct: 45  RC-FISDVERRGMEDSSIHNWISRLKDAMYDADDIIDLVSFEGSK 88


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 13  LAWKHNVEVRYIARPFGTRFALRCETFHQMRISAGA 120
           +A+ H+++   + +PFG   AL  +TF+ + +S  A
Sbjct: 69  IAYLHHIQRAKLIQPFGCLLALDEKTFNVIALSENA 104


>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 70  SECQKGEQYNVLRHYVSKRVSCD 2
           S+C KG+++  +R Y  + + CD
Sbjct: 77  SDCSKGQEHVFVRSYSDRLLKCD 99


>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
          Length = 369

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 235 VSRSVLIHFTNFVGKPSAFVLDKADPVTHQ 146
           V+R+ + HF     KP +++ D A PV+ +
Sbjct: 112 VTRAPVAHFVGRADKPPSWITDMAIPVSER 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,678,859
Number of Sequences: 37544
Number of extensions: 81096
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)