Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J23
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35405| Best HMM Match : TraI (HMM E-Value=2.1)                      26   5.4  
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)             26   5.4  
SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  25   7.2  
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)                    25   9.5  
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)                  25   9.5  
SB_23905| Best HMM Match : Sigma70_ner (HMM E-Value=0.4)               25   9.5  
SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0)                        25   9.5  
SB_7894| Best HMM Match : Pox_A14 (HMM E-Value=0.13)                   25   9.5  

>SB_35405| Best HMM Match : TraI (HMM E-Value=2.1)
          Length = 332

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 231 RDPFLFTLPILSVNRPLSFSTRQ 163
           + P LF+LP+ SV+  L+ STR+
Sbjct: 305 KSPILFSLPVDSVDTILTHSTRR 327


>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
          Length = 628

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 90  RFASQCKASAKRASNITYFDIMFPSE 13
           RF S+CK+   RA +I   D+  PSE
Sbjct: 194 RFCSECKSKVLRAFSILAGDLDGPSE 219


>SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 101 CGLVQELRRQGFDESLMSNWVCLVENESGR 190
           CG   EL++   DE + + W+C  E   G+
Sbjct: 41  CGSCDELKQFKMDEIVKNCWLCCHEEGDGQ 70


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  CRSTLYCSPFWHSLCIA 80
           CR  +Y  PFW +L IA
Sbjct: 133 CRLFMYVKPFWPTLAIA 149


>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
          Length = 1128

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -1

Query: 183  LSFSTRQTQXXXXXXXXXXXXXXCTNPHLVKRFASQCKASAKRASNITYFD 31
            ++ S R+T+                 PH   R + QC ++  R SN+T ++
Sbjct: 937  VTLSVRETRGVTRSTSGPPPQGTHPRPHSTIRISEQCTSTTNR-SNVTQYE 986


>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
          Length = 420

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 80  RNAKRVPKGRAI*RTSTLCFQASLLR 3
           +N+K VPK   + RT T   + SL+R
Sbjct: 121 KNSKYVPKFHCLPRTGTCALKTSLVR 146


>SB_23905| Best HMM Match : Sigma70_ner (HMM E-Value=0.4)
          Length = 322

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 83  AKRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKI 205
           A+ F  C   +    QGF +S +S W       SG+  +KI
Sbjct: 198 AQEFGECISKRHKAFQGFQDSTISKWSEKTRLASGKVNNKI 238


>SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 399

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 211 FTNFVGKPSAFVLDKADPVTHQTFIE 134
           F NF     AF++ K +PV H T +E
Sbjct: 97  FQNFTSFTLAFIVCKLNPVIHGTSME 122


>SB_7894| Best HMM Match : Pox_A14 (HMM E-Value=0.13)
          Length = 833

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 51  SPFWHSLCIAMRNVSPD 101
           SPFWH LC  +    PD
Sbjct: 252 SPFWHKLCSDLITGVPD 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,791,116
Number of Sequences: 59808
Number of extensions: 107014
Number of successful extensions: 251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)