Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J23
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    25   5.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    25   5.4  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z75539-2|CAA99844.2|  555|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U32326-1|AAC46965.1|  555|Caenorhabditis elegans G protein signa...    25   9.5  
AF003138-1|AAK21371.3|  469|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 107 LVQELRRQGFDESLMSNWVCLVEN 178
           L+ EL      E + SNW CLVEN
Sbjct: 159 LITELHHILIPELVKSNWTCLVEN 182


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 101  CGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIG--KVNKNGS 229
            C L+ +L   G DE      V L ENE GRF    G  K+ KN S
Sbjct: 1168 CQLMAQLGWIG-DEEQKGPTVFLDENECGRFDSSFGPVKIEKNVS 1211


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 80   DAKRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKI 205
            D +R   C  V E R     + +   W+C  EN+ G  +D++
Sbjct: 3826 DKQRCPTCDDVGEFRCATSGKCIPRRWMCDTENDCGDNSDEL 3867


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 80   DAKRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKI 205
            D +R   C  V E R     + +   W+C  EN+ G  +D++
Sbjct: 3826 DKQRCPTCDDVGEFRCATSGKCIPRRWMCDTENDCGDNSDEL 3867


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +3

Query: 18   LET*CRSTLYC---SPFWHSLCIAMRNVSPDAD*CRSL 122
            L+  C++   C    PF    CI+ R V+P+ D C  +
Sbjct: 922  LKANCKAKPICLGTGPFKQEQCISSRRVTPENDNCEKI 959


>Z75539-2|CAA99844.2|  555|Caenorhabditis elegans Hypothetical
           protein F28C1.2 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 176 SRQGRPSYSSNFHRSL 129
           SR GRP YSS  H +L
Sbjct: 218 SRSGRPKYSSGGHAAL 233


>U32326-1|AAC46965.1|  555|Caenorhabditis elegans G protein
           signaling regulator protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 176 SRQGRPSYSSNFHRSL 129
           SR GRP YSS  H +L
Sbjct: 218 SRSGRPKYSSGGHAAL 233


>AF003138-1|AAK21371.3|  469|Caenorhabditis elegans Hypothetical
           protein F12B6.3 protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 120 LEDKASMKV**VTGSALSRTKADGLPTK 203
           L++K SM     TG+  SR++ DGL TK
Sbjct: 363 LDEKKSMSRTTSTGTNRSRSELDGLDTK 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,948,077
Number of Sequences: 27780
Number of extensions: 71181
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)