Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J23
         (240 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47160.1 68415.m05889 anion exchange family protein contains ...    29   0.57 
At3g62270.1 68416.m06996 anion exchange family protein contains ...    27   1.3  
At5g35753.1 68418.m04282 expressed protein                             26   3.0  
At4g11980.1 68417.m01907 MutT/nudix family protein low similarit...    26   3.0  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    26   3.0  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    26   3.0  
At5g13280.1 68418.m01525 aspartate kinase identical to aspartate...    25   7.0  
At2g44090.1 68415.m05483 expressed protein                             25   9.3  

>At2g47160.1 68415.m05889 anion exchange family protein contains
           some similarity to SWISS-PROT:P04919 anion transport
           protein (anion exchange protein 1) [Mouse] {Mus
           musculus}
          Length = 704

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 179 RSRQGRP-SYSSNFHRSLV--F*APALIRIW*NVSHRNAKRVPKG 54
           RSR+ R   Y + + RSL+  +  P ++ +W  VS+  A  VPKG
Sbjct: 217 RSRKARSWRYGTGWLRSLIADYGVPLMVLVWTGVSYIPAGDVPKG 261


>At3g62270.1 68416.m06996 anion exchange family protein contains
           similarity to anion exchanger 3, cardiac splice form -
           Rattus norvegicus, PIR:A42497
          Length = 703

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 179 RSRQGRP-SYSSNFHRSLV--F*APALIRIW*NVSHRNAKRVPKG 54
           RSR+ R   Y + + RSLV  +  P ++ +W  VS+     VPKG
Sbjct: 217 RSRKARSWRYGTGWLRSLVADYGVPLMVLVWTGVSYIPTGDVPKG 261


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 49  QYNVLRHYVSKRVSC 5
           QY  LR YV+KR+SC
Sbjct: 105 QYEYLRKYVNKRLSC 119


>At4g11980.1 68417.m01907 MutT/nudix family protein low similarity
           to SP|P54570 ADP-ribose pyrophosphatase (EC 3.6.1.13)
           {Bacillus subtilis}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 309

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 125 RQGFDESLMSNWVCLVENESGRFTD 199
           R   D SL  NW+  +E+ESG   D
Sbjct: 71  RDAIDSSLFRNWLRNLESESGILAD 95


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 49  QYNVLRHYVSKRVSC 5
           QY  LR YV+KR+SC
Sbjct: 182 QYEYLRKYVNKRLSC 196


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 49  QYNVLRHYVSKRVSC 5
           QY  LR YV+KR+SC
Sbjct: 182 QYEYLRKYVNKRLSC 196


>At5g13280.1 68418.m01525 aspartate kinase identical to aspartate
           kinase [Arabidopsis thaliana] GI:4376158
          Length = 569

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 96  VKRFASQCKASAKRASNITYFDIMFPSESP 7
           V +F     ASA+R   +    + FP ESP
Sbjct: 89  VMKFGGSSVASAERMKEVADLILTFPEESP 118


>At2g44090.1 68415.m05483 expressed protein
          Length = 582

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 SLMSNWVCLVENESGRFTDKIGKVNKNGSRDY 238
           SL S W    E+E    T+ I K+  +G++DY
Sbjct: 103 SLDSIWFLSTEHELRGITELIAKIICHGAQDY 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,634,437
Number of Sequences: 28952
Number of extensions: 66222
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,070,560
effective HSP length: 58
effective length of database: 10,391,344
effective search space used: 218218224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)