Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J22
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    26   2.0  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   2.0  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   2.6  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    25   3.4  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    25   4.5  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   4.5  

>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 263 PATNPELIHYLETARTKLTSESEFQN-KETISIVTKVGLVHKVPNLQ 126
           P  +PE+ HY+++   KL     + + ++ I  VT+  LV  +  +Q
Sbjct: 161 PDYDPEIFHYMQSLERKLAPPPNYMSVQQEIDWVTRHMLVDWIVQVQ 207


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 257 TNPELIHYLETARTKLTSESEFQNKETISIVTKVGLVHKVP 135
           T+P+ I  L    T LT+E E  N + ++ VTK   V   P
Sbjct: 55  TDPDAIVELSKKCTLLTTEIEHINTDALAAVTKSVAVEPSP 95


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 242 IHYLETARTKLTSESEFQNKETISIVTKVGL 150
           + YLET  TKL       N E + ++ K+ +
Sbjct: 115 VEYLETENTKLVKTLNSLNSEFLQLLRKIAI 145


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 353 LFPKNSIKVYVRAMDISTWTLAELNEAIA 267
           L+PK+SI VY++ ++ S   LA L  AI+
Sbjct: 124 LYPKSSIDVYIQVIE-SDGALATLAAAIS 151


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 341 NSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKL-TSESEFQN-KETISI 168
           N   + + AM  +   +  L   +     N + +  LET RTKL T + E++   E  + 
Sbjct: 118 NRYYLALEAMIAAQDKMQALQTQVEASTNNAKAVEELETLRTKLETRDKEYETLAEKYAA 177

Query: 167 VTK 159
           VTK
Sbjct: 178 VTK 180


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 272 IANPATNPELIHYLETARTKLTSESEFQNKETISI 168
           I NP  NP L+   E AR+K   E   +NK+ ++I
Sbjct: 79  IQNPEQNPFLLSKEEAARSKQKQE---KNKDRLTI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,149,252
Number of Sequences: 5004
Number of extensions: 18568
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)