Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J22
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875...    28   1.8  
08_02_1384 + 26599950-26600033,26600307-26600374,26601000-266010...    26   7.4  
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...    26   9.8  

>01_06_0880 +
           32687018-32687060,32687142-32687219,32687323-32687532,
           32687868-32689744
          Length = 735

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 227 TARTKLTSESEFQNKETISIVTKVGLVHK 141
           TA   +T E    NK++ ++V K+ LVHK
Sbjct: 130 TASVSITIEDTTSNKDSSTLVEKIKLVHK 158


>08_02_1384 +
           26599950-26600033,26600307-26600374,26601000-26601072,
           26601299-26601408,26601491-26601595,26601815-26601914,
           26601989-26602165
          Length = 238

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 293 LAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTK 159
           L  L EA        +L+HY+ TAR  L         E IS V+K
Sbjct: 10  LLRLLEAAPRQQNQAKLVHYVTTARELLEQLGAETTPEGISSVSK 54


>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 353 LFPKNSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETI 174
           L  +N++K+ +  +D     L +        A    L   LE  RTKL SE++    E  
Sbjct: 450 LVAENNLKMEILPVDDLDIALHDFVSKDDKMAFYACLQRNLEETRTKLNSEADKFKIEEE 509

Query: 173 SIVTKVG 153
            I+ KVG
Sbjct: 510 DIIVKVG 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,935,707
Number of Sequences: 37544
Number of extensions: 104853
Number of successful extensions: 284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)