Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J22
         (355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   1.6  
Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical ...    27   3.8  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF047663-2|AAC04450.1|  252|Caenorhabditis elegans Delta/serrate...    26   8.7  

>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 208 HRNLSFKIRRQSALLQKWVLYTRCQTCNQSILMKYLKKV 92
           H  + +KIR Q A+ +   LY   +  N   L+KYL+K+
Sbjct: 59  HSLIEYKIRLQVAVKRYGFLYVITEYINGGDLLKYLRKL 97


>Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical protein
            F14F4.3b protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -3

Query: 353  LFPKNSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETI 174
            L+P  +  +Y+  +DI T  L +L   I+  A +P L  +  T R  L    E+ +    
Sbjct: 1167 LYPVTNGTIYIDGVDIRTVGLVKLRRGISAIAQDPSL--FSGTVRFNLDPSLEYSDSMIW 1224

Query: 173  SIVTKVGLVHKVPNL 129
              + K  L   V +L
Sbjct: 1225 EALEKCHLKTLVQSL 1239


>Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical protein
            F14F4.3a protein.
          Length = 1400

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -3

Query: 353  LFPKNSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETI 174
            L+P  +  +Y+  +DI T  L +L   I+  A +P L  +  T R  L    E+ +    
Sbjct: 1140 LYPVTNGTIYIDGVDIRTVGLVKLRRGISAIAQDPSL--FSGTVRFNLDPSLEYSDSMIW 1197

Query: 173  SIVTKVGLVHKVPNL 129
              + K  L   V +L
Sbjct: 1198 EALEKCHLKTLVQSL 1212


>AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical
            protein F14F4.3b protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -3

Query: 353  LFPKNSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETI 174
            L+P  +  +Y+  +DI T  L +L   I+  A +P L  +  T R  L    E+ +    
Sbjct: 1167 LYPVTNGTIYIDGVDIRTVGLVKLRRGISAIAQDPSL--FSGTVRFNLDPSLEYSDSMIW 1224

Query: 173  SIVTKVGLVHKVPNL 129
              + K  L   V +L
Sbjct: 1225 EALEKCHLKTLVQSL 1239


>AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical
            protein F14F4.3a protein.
          Length = 1400

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -3

Query: 353  LFPKNSIKVYVRAMDISTWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETI 174
            L+P  +  +Y+  +DI T  L +L   I+  A +P L  +  T R  L    E+ +    
Sbjct: 1140 LYPVTNGTIYIDGVDIRTVGLVKLRRGISAIAQDPSL--FSGTVRFNLDPSLEYSDSMIW 1197

Query: 173  SIVTKVGLVHKVPNL 129
              + K  L   V +L
Sbjct: 1198 EALEKCHLKTLVQSL 1212


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 332 KVYVRAMDISTWTLAELNEAIANPATNP--ELIHYLETARTKLTSESEFQN 186
           K+  RAMDI    +A L+E + NP+ +   E+I   E  R   +   E Q+
Sbjct: 439 KLRTRAMDIDQQRIALLDEKLDNPSVDDVREIIFLREIMRRVWSINRELQD 489


>Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical
           protein Y41E3.12 protein.
          Length = 326

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 90  ITFFKYFIKIDWLQVWHLVYKTHFCNNADCLLILKLRFRCQFSTCC 227
           +  F  FI++ +L + ++++KT+   +    +I+ L F    +T C
Sbjct: 40  LIIFGIFIELLYLPIVYIIFKTNLIKHVCYKIIVVLAFVDMMATAC 85


>AF047663-2|AAC04450.1|  252|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein1 protein.
          Length = 252

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 93  TFFKYFIKIDWLQVWHLVYKTHFCNN 170
           T F+Y IK +  + WH ++  HFCN+
Sbjct: 114 TGFRYDIKCN--RYWHGLHCDHFCND 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,320,241
Number of Sequences: 27780
Number of extensions: 107220
Number of successful extensions: 290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)