Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J22
         (355 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase...    30   0.51 
At1g28630.1 68414.m03526 expressed protein ; expression supporte...    29   1.2  
At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB...    29   1.2  
At3g55600.1 68416.m06175 expressed protein predicted proteins, A...    28   1.6  
At3g30560.1 68416.m03867 hypothetical protein                          28   2.1  
At5g57890.1 68418.m07242 anthranilate synthase beta subunit, put...    27   3.6  
At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein ...    27   3.6  
At2g07707.1 68415.m00957 hypothetical protein contains Pfam prof...    26   6.3  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    26   8.3  

>At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase,
           putative / ADP-glucose pyrophosphorylase, putative
           (APS2) similar to SP|P52416 from [Vicia faba]; contains
           Pfam profile PF00483: Nucleotidyl transferase; identical
           to cDNA GI:31408039
          Length = 476

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 214 LVRAVSK*CINSGFVAGFAIASFNSANVQVDMSIA 318
           L+ AV   CINSG    +AI  FNS ++   +S A
Sbjct: 88  LIDAVISNCINSGITKIYAITQFNSTSLNSHLSKA 122


>At1g28630.1 68414.m03526 expressed protein ; expression supported
           by MPSS
          Length = 321

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = -2

Query: 354 SFSQEFHQSLCSGNGHINLDIS*IERSDREPCNKSRINTLFR--NSTY*TDIGI*VSK*G 181
           S +Q+  Q LC+ +GH+  ++S I+ SD++  +      LF+  N++   DIG  + + G
Sbjct: 187 STTQQQQQLLCNSHGHVQGNLSNIQ-SDQQYLSNQNATDLFQEPNNSTMIDIGQQIEE-G 244

Query: 180 DNQHCYK 160
           +N + ++
Sbjct: 245 NNGYAHQ 251


>At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB1)
           identical to anthranilate synthase beta subunit
           GI:403434 from [Arabidopsis thaliana]
          Length = 276

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 296 TLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKV 156
           T   LN ++ NP TNP  +  L  +R  + +++  +  E+ SI + V
Sbjct: 19  TTRRLNPSLVNPLTNPTRVSVLGKSRRDVFAKASIEMAESNSIPSVV 65


>At3g55600.1 68416.m06175 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 240

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 293 LAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTK 159
           L  L  A  N     +L+HY+ T R +L   SE +  E +  VTK
Sbjct: 11  LRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTK 55


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 169 LLQKWVLYTRCQTCNQSILMKYLKKVIKQ 83
           LL+K+  +   + CNQS+ +KYL K + +
Sbjct: 679 LLRKYRAHINVEWCNQSVSVKYLFKYVNK 707


>At5g57890.1 68418.m07242 anthranilate synthase beta subunit,
           putative strong similarity to anthranilate synthase beta
           chain GI:403434 [Arabidopsis thaliana]
          Length = 273

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 299 WTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKV 156
           +T   LN+++ N  TNP  +  L  +R  + +++  +  E+ SI + V
Sbjct: 18  FTTRRLNQSLVNSLTNPTRVSVLWKSRRDVIAKASIEMAESNSISSVV 65


>At1g11490.1 68414.m01320 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 365

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 239 HYLETARTKLTSESEFQNKETISIVTKVGLVHKVPNLQPVNLDEIFKKSN 90
           HYL           +F ++ T+ ++   G  HK+  ++  N+  IFK  N
Sbjct: 145 HYLSNHSVVRLLAGDF-SRTTVELICNTGYSHKLGKMKGNNISAIFKIQN 193


>At2g07707.1 68415.m00957 hypothetical protein contains Pfam profile
           PF02326: YMF19 hypothetical plant mitochondrial protein
          Length = 158

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 99  FKYFIKIDWLQVWHLVYKTHFCNNADCLL----ILKLR 200
           F YF +  WL ++   +    CN+ D +L    ILKLR
Sbjct: 7   FTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLR 44


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/54 (25%), Positives = 32/54 (59%)
 Frame = -3

Query: 311 DISTWTLAELNEAIANPATNPELIHYLETARTKLTSESEFQNKETISIVTKVGL 150
           D+++   A+L+ A A+PA+N +    ++T R   + + E ++  T+S++  V +
Sbjct: 165 DVNSGIKAKLSTA-ASPASNAKQASTVKTKRQPKSKKFEDKSSPTVSVLETVSV 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,884,246
Number of Sequences: 28952
Number of extensions: 93180
Number of successful extensions: 295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)