Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J19
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    31   0.12 
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   3.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   7.9  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.9  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.9  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   7.9  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 461 TRNPSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCALR-RARPTRYGL 312
           ++NP  R +SR+       PP+SAP++    +   P  A + R R  R+G+
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGV 241


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 409 YYHQDLHRRRLQAGSRPDPSALSAAHVLL 323
           Y  +DL RR+LQ  S+P  S  + A V++
Sbjct: 191 YKSEDLKRRKLQPSSKPLSSLEARAKVIM 219


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 378 SRRARAQTLLRSPPRTSYSLRLNDTRVSASH 286
           SRR  + T+  SP RT+Y    N+ + SA++
Sbjct: 84  SRRVASYTVQSSPSRTTYRQLPNEPQNSAAY 114


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 396 ICTDGGSRRARAQTLLR--SPPRTSYSLRLNDTRVSASHVPVTVV 268
           I ++  S    + TLL   S   TSY++    T  S SH+P+  V
Sbjct: 610 IYSEPNSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTV 654


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 361 GASPPGASVGADLGGSSKYSSEALED*R 444
           GA P G + GAD+  S   S+EA  + R
Sbjct: 95  GAKPSGTASGADVKRSDSESTEATSNER 122


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 115 LGALTLRLVHPTAPVLLTKIG 53
           +G   LR V+P +P+LLT  G
Sbjct: 323 IGHKELRFVYPISPILLTLAG 343


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 130 SHERFLGALTLRLVHPTAPVLLT 62
           +HE +  AL + L +P  P++LT
Sbjct: 4   NHEVYKDALPISLAYPLPPIILT 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,200
Number of Sequences: 5004
Number of extensions: 40633
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)