Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J19
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0192 + 13344558-13344942,13345038-13345591 29 1.9
01_06_0956 - 33343503-33344086,33344225-33344384 29 2.6
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 28 3.4
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836... 28 3.4
01_01_0094 - 730484-731570,732030-732715 28 3.4
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 4.5
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 4.5
05_05_0200 - 23171803-23171906,23172304-23173951 28 4.5
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 4.5
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 27 5.9
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 5.9
06_03_0911 + 25889333-25889597,25891464-25892038,25892201-258925... 27 5.9
05_01_0304 - 2392526-2392828 27 5.9
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 27 5.9
01_01_0097 - 741881-742977,743100-743320,743438-744156 27 5.9
07_03_1249 - 25172651-25172893,25173001-25173355,25173435-251735... 27 7.8
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609 27 7.8
04_04_1575 + 34548774-34549109,34549979-34550185 27 7.8
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 29.1 bits (62), Expect = 1.9
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = -1
Query: 375 RRARAQTLLRSP-PRTSYSLRLNDTRVSASHVPVTVVYRQNA-SAPSIFRAGCFGR*VVA 202
++ +TLL SP R S L+LN V P + + S + + V
Sbjct: 187 KKRDGKTLLYSPYRRQSARLQLNKEGVELKEDPRMGIGKPTGKSVKKLKELAGIAKIFVD 246
Query: 201 HSLADSDFHGHR-PAVMSDQRLSWCPMSV 118
++L DSDFHG+ + SD S C +S+
Sbjct: 247 NNLKDSDFHGNTYDDIHSDSSPSDCSVSL 275
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 452 PSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCALRR 336
PSPR R + + LPP AP +P AP P RR
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSP---APAPAATQRR 170
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 455 NPSPRQSSRASLEYLLLPPRSAPTEA---PGGLAPRP 354
NP+P S+ + L PP +AP A PGG A P
Sbjct: 9 NPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGP 45
>01_06_0971 -
33483015-33483071,33483282-33483315,33483590-33483684,
33483769-33483843,33483925-33484010,33484256-33484307,
33484381-33484455,33484554-33484620,33485699-33486159
Length = 333
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 467 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCA 345
L R+P+P + R+ L S+PT A AP PF A
Sbjct: 10 LLRRSPTPIPNPRSLLSLDAFLAASSPTAASHATAPAPFAA 50
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 196 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 101
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 380 PPSVQILVVVANTPARPW 433
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -3
Query: 232 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 149
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_05_0200 - 23171803-23171906,23172304-23173951
Length = 583
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 467 LFTRNP-SPRQSSRASLEYLLLPPRSAPTEAPG 372
LF NP SP +SS AS ++ SAP +PG
Sbjct: 491 LFRSNPGSPYRSSTASPSIFIMESPSAPRRSPG 523
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 69 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 233
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 361 GASPPGASVGADLGGSSKYSSEALED 438
G + PGA GA+ GG + Y + A D
Sbjct: 258 GGAAPGAYEGANYGGGNNYMNNATSD 283
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 163 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 56
C E PF HE ALTL + PTA L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>06_03_0911 +
25889333-25889597,25891464-25892038,25892201-25892580,
25892667-25892753,25892812-25893181,25893352-25893762,
25893845-25893904,25894013-25894219
Length = 784
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 325 VGRARRRAQKGLGASPPGASVGADLGGSSKYSSEALE 435
V + + A++ G PGA+ G D G +S+Y E E
Sbjct: 32 VSKVKMTAERRGGEGSPGAAAGKDGGAASEYLIEEEE 68
>05_01_0304 - 2392526-2392828
Length = 100
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 477 RATTVHAKPFSTSVLQGLAG 418
RATTV A+P +T+V G AG
Sbjct: 40 RATTVKARPATTAVAAGFAG 59
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 461 TRNPSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCALRRARPTRYGLMI 306
+R P + SR S ++ PP +P +APG + +P A PT +G+ +
Sbjct: 51 SRVPPLERVSRRS--EVVFPPLDSPFQAPGYRSVQPVSISLPASPTGFGVPV 100
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 196 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 101
+ G +LP P C + P P +V RF LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671
>07_03_1249 -
25172651-25172893,25173001-25173355,25173435-25173593,
25173809-25174269,25175137-25175322,25175429-25175800
Length = 591
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 437 SSRASLEYLLLPPRSAPTEAPGGLAPRPFC---ALRRARPTRYGLMI 306
++ ASLE LLL PR +P +P A RP A RRAR + +
Sbjct: 36 AAAASLEQLLLLPRWSPPSSPLSFA-RPAAERVAARRARAAAVAMKV 81
>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
Length = 475
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 122 LMGHHERRWSLMTAGRWPWKSESAKEC 202
L G HER GRW W+ AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 395 SAPTEAPGGLAPRPFCALRRAR 330
SAP+ GLAP PF + R AR
Sbjct: 3 SAPSTTASGLAPPPFSSARGAR 24
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,724
Number of Sequences: 37544
Number of extensions: 363830
Number of successful extensions: 1366
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -