Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J19
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    27   7.0  

>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 126 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*KWMALKRFAYTLPLQAREMRSR 302
           W T+  V +S Q+ G   +R P+R + R     + P   M ++      P++ RE  ++
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP---MKIEFAGLNAPIRMRETENQ 64


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 126 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*KWMALKRFAYTLPLQAREMRSR 302
           W T+  V +S Q+ G   +R P+R + R     + P   M ++      P++ RE  ++
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSP---MKIEFAGLNAPIRMRETENQ 64


>U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical
           protein K09E3.7 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 452 PSPRQSSRASLEYLLLPPRSAPTEAPGGLA 363
           P+P   SR+++  ++  P   PT APG +A
Sbjct: 797 PNPSMISRSTMPLIMSYPNILPTAAPGAIA 826


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 461 TRNPSPRQSSRASLEYLLLPPRSAPTEAPGGLAPRPFCALRRARPT 324
           T  P P   +    ++  LPP   PT  PG      +  LRR + T
Sbjct: 250 TPRPIPTTKTTVPQQWTTLPPGPEPTPGPGPSGECCYIDLRRIQAT 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,828,789
Number of Sequences: 27780
Number of extensions: 247283
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)