Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J19
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48960.1 68414.m05487 universal stress protein (USP) family p...    28   2.8  
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein...    28   3.8  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    28   3.8  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   3.8  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   3.8  
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P...    27   6.6  
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P...    27   6.6  
At2g25100.1 68415.m03003 ribonuclease HII family protein contain...    27   6.6  
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop...    27   6.6  
At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase...    27   8.7  

>At1g48960.1 68414.m05487 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family; similar to hypothetical protein GI:7770340 from
           [Arabidopsis thaliana]
          Length = 219

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 434 SRASLEYLLLPPRSAPTEAPGGLAPRPFCALRRARPTR 321
           S+  +  L +P    PT+ P  L P P   L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209


>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
           contains Pfam profile:PF01760 CONSTANS family zinc
           finger
          Length = 225

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -3

Query: 292 ISRACNGSV*AKRFS-AIHFQGWLLRQVSRCT--LLSGFRLPWPP--SCCHE 152
           + R+C+    A  F  A HF+  +       T   +SG  LPWPP  +CC E
Sbjct: 23  LCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGPLLPWPPRTTCCSE 74


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 262
           +T+  WP  SESAK+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 111 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 212
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 111 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 212
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
           reductase homolog (PRH26) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738760; identical to cDNA PAPS reductase homolog
           (PRH26) GI:1710113
          Length = 458

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 122 LMGHHERRWSLMTAGRWPWKSESAKEC 202
           L G HER       GRW W+   AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314


>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
           reductase homolog (PRH19) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738756; identical to cDNA PAPS reductase homolog
           (PRH19) GI:1710111
          Length = 465

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 122 LMGHHERRWSLMTAGRWPWKSESAKEC 202
           L G HER       GRW W+   AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322


>At2g25100.1 68415.m03003 ribonuclease HII family protein contains
           Pfam profile: PF01351 ribonuclease HII
          Length = 296

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 107 LNTTFGSSHSASSAYQNWPTWHRHQISGF--IVRVS 6
           +N  FGS +      + W   H+H + GF  +VR S
Sbjct: 188 INRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFS 223


>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
           chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
           5'-adenylylsulfate (APS) sulfotransferase 2 /
           3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
           homolog 43 (PRH-43) identical to SP|P92981
           5'-adenylylsulfate reductase 2, chloroplast precursor
           (EC 1.8.4.9) (Adenosine 5'-phosphosulfate
           5'-adenylylsulfate sulfotransferase 2) (APS
           sulfotransferase 2) (Thioredoxin independent APS
           reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
           reductase homolog 43) (PAPS reductase homolog 43)
           (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
           reductase homolog (PRH43) GI:1710115
          Length = 454

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 122 LMGHHERRWSLMTAGRWPWKSESAKEC 202
           L G HER       GRW W+   AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314


>At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase PGA3
           [Arabidopsis thaliana] GI:3152948; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 395

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 250 SAIHFQGWLLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVSHERF 116
           S IHF+  LL+ VS   L+     PW   C  ++P+   +++  F
Sbjct: 281 SDIHFENILLKNVSNPILIDQEYCPW-NQCNKQKPSTIKLANISF 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,375
Number of Sequences: 28952
Number of extensions: 245596
Number of successful extensions: 698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)