Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J18
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    25   9.7  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   9.7  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 415 KLASLAPWHSPSCSIFRDGIIF 480
           KL    PW    C IF D I++
Sbjct: 214 KLQGFPPWQLRLCEIFHDPILY 235


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 193 IINIQFLMLNFSYILERALIFLIKMKNK 110
           I+ I   +  FS+++ R +IF I + NK
Sbjct: 41  ILPIIITLFIFSFVISRMIIFFISLFNK 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,625
Number of Sequences: 5004
Number of extensions: 43028
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)