Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J18
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639...    31   0.61 
01_06_1092 + 34469732-34470118                                         30   1.1  
08_01_1007 - 10201181-10201298,10202180-10202484,10202577-102027...    28   5.6  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    28   5.6  
05_04_0286 + 19833114-19834053,19834149-19834165                       28   5.6  

>01_01_0010 -
           62670-62783,62877-63020,63339-63431,63665-63779,
           63902-64152,64248-64431,64694-64950
          Length = 385

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 364 PSLPQTGPFSRVHIHGCKLASLAPWHSPSCSIFRDGIIFWVHSSEHLLA*VFPL 525
           PS      FS V I+ C L  L   +S S    +DG++F+ +   H LA + PL
Sbjct: 190 PSTYHRYRFSAVPIYECTLQGLQAAYSGSTPYVKDGLLFY-NKHAHYLAGITPL 242


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -2

Query: 434 GAKLASLHPCICTREKGPVCGSDGVTY 354
           G   A L P  C R   PVCG+DGVTY
Sbjct: 49  GGSEAQLCPVRCFRPD-PVCGADGVTY 74


>08_01_1007 -
           10201181-10201298,10202180-10202484,10202577-10202726,
           10202954-10202956
          Length = 191

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = -2

Query: 512 YANKCS--LECTQKIIPSL----KMEHDGECQGAKLASL 414
           + NKC   +EC QK  P L    K+  DG CQGA L  L
Sbjct: 125 FENKCKELIEC-QKASPQLLLTAKVTQDGSCQGAILDQL 162


>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
            6071030-6071211,6071331-6071422,6071505-6071835,
            6071960-6072170,6072551-6072665,6073677-6073838,
            6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 236  CSNGFSFPPPTLCYYRKDRCVR-CSSLVWTVTRIL 337
            CS G S   P + Y R  RC++ CS L   + R+L
Sbjct: 1024 CSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLL 1058


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 407 CICTREKGPVCGSDGVTYSNLCL 339
           C   R  G VCG DG ++ +LCL
Sbjct: 252 CGACRATGGVCGHDGDSHGDLCL 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,429
Number of Sequences: 37544
Number of extensions: 268754
Number of successful extensions: 609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)