Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J18
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62810.1 68416.m07057 complex 1 family protein / LVR family p... 29 1.5
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f... 29 2.0
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO... 27 6.2
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 27 6.2
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 27 6.2
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 27 6.2
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 27 6.2
At5g42620.1 68418.m05188 expressed protein 27 8.3
At3g30843.1 68416.m03970 hypothetical protein 27 8.3
>At3g62810.1 68416.m07057 complex 1 family protein / LVR family
protein contains Pfam PF05347: Complex 1 protein (LYR
family)
Length = 106
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = -3
Query: 409 RVYARARKVQFAGATASLTAICAS*NARHCPNQA*ASNTPVLAIITECRRWETKTIRTSI 230
R RA K FAG T L A + + N+ ASN+ + ++ E R T+ I T I
Sbjct: 11 RALLRATKKSFAGDTEMLKASASEIRKKFEENRLVASNSDITRLLEEARE-ATQFISTMI 69
Query: 229 LSQMRTE 209
+ E
Sbjct: 70 VQAKLNE 76
>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 144
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = -2
Query: 473 IPSLKMEHD---GE-CQGAKLASLHPCICTREKGPVCGSDGVTYSNLCLLKCASLSKPSL 306
+PS K+ + GE C+G + P C R PVCG D VTY C CA +
Sbjct: 47 LPSEKINGEKNRGEFCEGIAKPASCPVQCFRPD-PVCGEDSVTY--WC--GCADALCHGV 101
Query: 305 SIEHTGPCD 279
+ G CD
Sbjct: 102 RVVKQGACD 110
>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
cell expansion protein COB, putative similar to
phytochelatin synthetase GI:29570314; similar to
GB:AAK56072; identified in Roudier, et al, Plant Phys.
(2002) 130:538-548 (PMID:12376623); identical to cDNA
putative phytochelatin synthetase GI:3559804; contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 456
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 544 MPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELNWRV 416
+PP V T + P VHW+ K+ Y+ W + N+R+
Sbjct: 287 LPPLVQCTRHMCPIRVHWHV-KQNYKE-YWRVKITITNFNYRL 327
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 236 CSNGFSFPPPTLCYYRKDRCVRCSSL 313
C GF PPT YR+D C L
Sbjct: 1192 CRKGFRHEPPTNVDYRRDMCAHARVL 1217
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 236 CSNGFSFPPPTLCYYRKDRCVRCSSL 313
C GF PPT YR+D C L
Sbjct: 1192 CRKGFRHEPPTNVDYRRDMCAHARVL 1217
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 236 CSNGFSFPPPTLCYYRKDRCVRCSSL 313
C GF PPT YR+D C L
Sbjct: 1192 CRKGFRHEPPTNVDYRRDMCAHARVL 1217
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 236 CSNGFSFPPPTLCYYRKDRCVRCSSL 313
C GF PPT YR+D C L
Sbjct: 1192 CRKGFRHEPPTNVDYRRDMCAHARVL 1217
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 536 VCGSNGKTYANKC--SLECTQKIIPSLKMEHDGECQGA 429
VC S ++Y C SL+C+ + + S E D EC G+
Sbjct: 786 VCHSACQSYNMACGASLDCSDQTLFSTAEEGDAECTGS 823
>At3g30843.1 68416.m03970 hypothetical protein
Length = 310
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 270 SVGGGKLKPFEQVYCHRCELKGECL 196
+VG K + E CHRC +KG CL
Sbjct: 250 NVGRVKKRHVEST-CHRCGMKGHCL 273
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,964
Number of Sequences: 28952
Number of extensions: 220823
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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