Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J17
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 89 2e-18
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 52 2e-07
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 49 2e-06
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 46 1e-05
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 46 1e-05
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 2e-04
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 2e-04
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 4e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 41 6e-04
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 40 7e-04
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 40 7e-04
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 40 0.001
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 40 0.001
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 40 0.001
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 39 0.002
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 38 0.005
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 37 0.007
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 33 0.11
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 32 0.19
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041) 29 1.4
SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08) 27 9.6
SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20) 27 9.6
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 27 9.6
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 89.0 bits (211), Expect = 2e-18
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +1
Query: 67 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXX 246
KK K + PKR MSAYMLWLN R++IK ++PG+ VTE++K GEMWK++ DKS W
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKA 593
Query: 247 XXXXXQYAKDLESYNAN 297
+Y + ++ YN N
Sbjct: 594 AIEKQKYVQRMKEYNEN 610
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 237
+K +K + PK P++ Y+ +LN RE+++SE+P L E+ + G MW + K ++
Sbjct: 168 KKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFL 227
Query: 238 XXXXXXXXQYAKDLESY 288
+Y K+LE Y
Sbjct: 228 EEAEKDKERYMKELEEY 244
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLW---LNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKS 228
RKK +KPK P++ Y+ + LNS RE +K +HP L EI K G+ W S+ ++K
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQ 244
Query: 229 IWXXXXXXXXXQYAKDLESY 288
+ +Y ++L +Y
Sbjct: 245 KFLDEAEEDKKRYVEELRAY 264
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 61 IRKKNKMTDKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
+R T KP KRPM+A+M+W +AR ++ ++P L E++K G++WK + D
Sbjct: 52 VRVNGIKTQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 46.8 bits (106), Expect = 8e-06
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
+K+ K +KPKR +SAY ++N R+ +K ++P ++K GEMW M D
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTD 145
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXX 249
K +KPK SAY +L RE+++ E + + +K E WK+M ++K +
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAG 66
Query: 250 XXXXQYAKDLESY 288
++ ++++SY
Sbjct: 67 KDKERFKEEMQSY 79
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 67 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
KK KRPM+A+M+W R ++ EHP + EI+K+ G+ WK + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSE 88
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 237
++K K+ +P +P+SAY ++ + I+ ++P + EIAK G+MW+++ + K ++
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYH 975
Query: 238 XXXXXXXXQYAKDLE 282
+Y K ++
Sbjct: 976 CKHETAKAEYQKAMD 990
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
K + KRPM+A+M+W R +I E+P + +EI+K+ G WK + D
Sbjct: 322 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
K + KRPM+A+M+W R +I E+P + +EI+K+ G WK + D
Sbjct: 5 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +1
Query: 70 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 225
K D+ KRPM+A+M+W R ++ ++P + +EI+K+ G WK + ++
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 44.4 bits (100), Expect = 4e-05
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
K K KRPM+++M+W SAR ++ ++P + E++K G++W+ +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
K D KRPM+AYM+W R +I E P + +EI+K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
KRPM+A+M+W + R Q+ +E+P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
KRPM+A+M+W + R Q+ +E+P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKS-EHPGLKVTEIAKKGGEMWKSMKDK 225
KRPM+A+M+W + R +IKS E P + +EI+K G WK+MKD+
Sbjct: 10 KRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 40.7 bits (91), Expect = 6e-04
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 85 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
D KRP++++M+W R + E+P ++ EI+K G+ W+ M +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPE 53
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 40.7 bits (91), Expect = 6e-04
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +1
Query: 67 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
+K+ T++ KRPM+A+M+W R ++ +P L E++K G W+++
Sbjct: 358 EKDDETERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXXXQY 267
KRPM+++M+W R + E+P L EI+K G+ W + KDK + ++
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAERLRIRH 154
Query: 268 AKDLESY 288
K+ +Y
Sbjct: 155 MKEHPNY 161
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 40.3 bits (90), Expect = 7e-04
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1
Query: 91 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
P++P+ YM + +Q+K+++P K+ +I K G+MW+ + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 31 QFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 210
Q K N +I A R K D+ + + + LWL R+QI+ E+P + ++ K + WK
Sbjct: 310 QSKVNNQIKADRPDEK-ADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWK 368
Query: 211 SMK--DKSIW 234
+ +K +W
Sbjct: 369 GLDSVEKKVW 378
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 70 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXX 243
KNK + + P+SA+ LW N AR+ + +P + ++ KK WK + K K W
Sbjct: 221 KNKYPNV-EPPLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKK 279
Query: 244 XXXXXXQYAKDLE 282
+Y K ++
Sbjct: 280 EKTEMRKYQKKIK 292
Score = 39.5 bits (88), Expect = 0.001
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +1
Query: 85 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 225
++PK P+++Y + R ++ ++P LK TE+A K + W+ M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
KRPM+ +M+W R QI E+PG+ ++K G WK +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQI--KSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXX 243
K DKPKRP +AY L+L + R+++ K+ G K+ +A GE W+ M +DK +
Sbjct: 572 KDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWREMSDEDKKPYTIQ 628
Query: 244 XXXXXXQYAKDLESY 288
+Y K +E +
Sbjct: 629 EAEERNKYEKVMEEW 643
Score = 35.1 bits (77), Expect = 0.027
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 64 RKKNKMTDKP--KRPMSAYMLWLNSAREQIKSEH-----PGLKVTEIAKKGGEMWKSMKD 222
RKK D P KR SAY+ + + R ++K++ P K E+AK GE WK + D
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 223 K 225
+
Sbjct: 545 E 545
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 88 KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 225
K KRPM+A+M+W R I +P EI+ + GE+W + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSE 145
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +1
Query: 82 TDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 225
++K KRP++A++LW R I +E+P + +I++K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 225
KRPM+A+M+W + R ++ ++P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 31 QFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 210
Q K N +I A R K D+ + + + LWL R+QI+ E+P + ++ K + WK
Sbjct: 17 QSKVNNQIKADRPDEK-ADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWK 75
Query: 211 SM 216
+
Sbjct: 76 GL 77
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 213
KR S Y+L+ + R I+ EHP EI++ GE W++
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 75
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +1
Query: 88 KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXXXXXXQY 267
K KRP A+ + +++K E+P LK EI K + W +++ +Y
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLEP-----SVKECYRKEY 359
Query: 268 AKDLESYNA 294
+D+E + A
Sbjct: 360 QQDMEEFRA 368
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 213
KR S Y+L+ + R I+ EHP EI++ GE W++
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 1308
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
K PM+A+M+ R+ S +PG+ +E +K G WK +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 30.7 bits (66), Expect = 0.59
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 85 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
D +RPM+A+M++ R + +HP ++K GE W ++
Sbjct: 514 DHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYAL 557
>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
Length = 169
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 94 KRPMSAYMLWLNSAREQIKSEHPG 165
KRPM+A+ML+ R +I HPG
Sbjct: 32 KRPMNAFMLFAKRYRLEITQAHPG 55
>SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 22 VVHQFKN-NFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 174
V+H F N K +R K K AY+ + +A E+ K + PG+ V
Sbjct: 61 VIHDFAGENVKYLELRSTPKSNPKTGMTKQAYVDAILTAIEEAKQKSPGIVV 112
>SB_13550| Best HMM Match : rve (HMM E-Value=3.4e-08)
Length = 241
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 250 WLLSLPKYFYLSLISTFHLLFWLF 179
WLL L K L + T LFWLF
Sbjct: 151 WLLPLKKKESLEVAQTIEPLFWLF 174
>SB_39188| Best HMM Match : Ion_trans (HMM E-Value=4.9e-20)
Length = 551
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 286 TILSL*HTVL*PWLLSLPKYFYLSLISTFHLLFW 185
T+L L H L + L F+L ++S FHL F+
Sbjct: 46 TLLRLQHNFLWAVVYLLDASFFLDIVSKFHLAFF 79
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +1
Query: 4 LYVYSLVVHQFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEI 183
L + S + K +I AI K+K + + R ++ + L+ + I +H G TE+
Sbjct: 644 LKLLSSNIEGLKQEVEIAAITVKSKESPQQARQIAQKAI-LDQELDLISHQHHGEDTTEL 702
Query: 184 AKKGGEMWKSMKDKSIW 234
KK E+ + K ++
Sbjct: 703 KKKVEELKQEAKSLGLF 719
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,697
Number of Sequences: 59808
Number of extensions: 183058
Number of successful extensions: 553
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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