Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J17
(452 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 63 1e-10
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 56 8e-09
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 56 8e-09
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 56 1e-08
At3g28730.1 68416.m03587 structure-specific recognition protein ... 52 1e-07
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 52 1e-07
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 51 3e-07
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 47 7e-06
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 42 1e-04
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 36 0.010
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 36 0.010
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro... 36 0.017
At2g38770.1 68415.m04760 expressed protein 29 1.5
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 28 3.4
At5g23320.1 68418.m02728 isoprenylcysteine carboxyl methyltransf... 27 4.5
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 27 4.5
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P... 27 5.9
At3g18770.1 68416.m02382 expressed protein 27 7.8
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 237
+K + ++KPKRP++A+ ++++ R+ KSEH G + AK GGE WKS+ ++K ++
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYL 165
Query: 238 XXXXXXXXQYAKDLESYNAN 297
+Y K LES +A+
Sbjct: 166 DKAAELKAEYNKSLESNDAD 185
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 56.4 bits (130), Expect = 8e-09
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 234
+K K +KPKR SA+ ++L R K E+P +K V+ + K GG+ WKSM +K+ +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 235 XXXXXXXXXQYAKDLESYNAN 297
+Y K +++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 56.4 bits (130), Expect = 8e-09
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMK--DKSIW 234
+K K +KPKR SA+ ++L R K E+P +K V+ + K GG+ WKSM +K+ +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 235 XXXXXXXXXQYAKDLESYNAN 297
+Y K +++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 55.6 bits (128), Expect = 1e-08
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 246
K +KPKRP SA+ +++ R K EHP K V + K GGE WKS+ D K+ +
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 247 XXXXXQYAKDLESYN 291
+Y K++++YN
Sbjct: 90 DKRKVEYEKNMKAYN 104
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 52.4 bits (120), Expect = 1e-07
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 67 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 240
KK K + PKR MS +M + R+ IK EHPG+ E+ K G+ W+ M DK +
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEA 613
Query: 241 XXXXXXXQYAKDLESY 288
+Y ++ Y
Sbjct: 614 KAQVDKQRYKDEISDY 629
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 52.4 bits (120), Expect = 1e-07
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 76 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD--KSIWXXXX 246
K +KPKRP SA+ +++ RE K E+P K V + K G+ WKS+ D K+ +
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 247 XXXXXQYAKDLESYN 291
+Y K++++YN
Sbjct: 93 EKRKVEYEKNIKAYN 107
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 51.2 bits (117), Expect = 3e-07
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = +1
Query: 64 RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSI 231
+KKN+ D KPK+P S+Y L+ AR+ + EHPG+ + + W + ++K +
Sbjct: 361 KKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQV 420
Query: 232 WXXXXXXXXXQYAKDLESYN 291
+ Y K++E YN
Sbjct: 421 YNSKAAELMEAYKKEVEEYN 440
Score = 48.4 bits (110), Expect = 2e-06
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 67 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWXX 240
KK K KPK+P+SAY+++ N R +K E+ V E+AK GE WK++ + K+ +
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKKAPYDQ 295
Query: 241 XXXXXXXQYAKDLESY 288
Y +++E Y
Sbjct: 296 MAKKNKEIYLQEMEGY 311
Score = 35.1 bits (77), Expect = 0.022
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 64 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
+KK K + KRP + Y+LW ++K ++P E + G WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 46.8 bits (106), Expect = 7e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +1
Query: 67 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 225
KK K KPK P+SA++++ N R ++ E+ V E+AK GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDK 297
Score = 46.4 bits (105), Expect = 9e-06
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 64 RKKNKMTD--KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSI 231
+KKN+ D KPK+P S+Y L+ R+++ E PG + WK S ++K +
Sbjct: 368 KKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQV 427
Query: 232 WXXXXXXXXXQYAKDLESYN 291
+ Y K++E+YN
Sbjct: 428 YNGKAAKLMEAYKKEVEAYN 447
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 58 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 216
A +KK K + KRP S+Y+LW ++K E+P E + G WKS+
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 82 TDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM 216
T PK+P +A+ +L+ R+Q + E+P +K + EI K GE WK+M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 70 KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
K K T+K K S + +++N R+ ++++ G V E +K G EMWKSM +
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 70 KNKMTDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 222
K K T+K K S + +++N R+ ++++ G V E +K G EMWKSM +
Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106
>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to SP|O15347|HMG4_HUMAN High
mobility group protein 4 (HMG-4) (High mobility group
protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 448
Score = 35.5 bits (78), Expect = 0.017
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 70 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXXX 243
K + D PK S Y + ++K HPG K +I++ GE+W + +K I+
Sbjct: 256 KRRDPDHPKPNRSGYNFFFAEQHARLKPLHPG-KDRDISRMIGELWNKLNEDEKLIYQGK 314
Query: 244 XXXXXXQYAKDLESY 288
+Y ++E Y
Sbjct: 315 AMEDKERYRTEMEDY 329
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 40 NNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEI 183
N+FKI +++ N +KP + + S R QI+SE LK ++
Sbjct: 560 NDFKIAQVKQPNIGEEKPSSVTAEVTFSIKSYRTQIRSEWNSLKEHDV 607
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 58 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEH 159
AIRK DKP+ + Y+LW + + KS+H
Sbjct: 274 AIRKGWIKFDKPEEEPNVYLLWGDDSTSDQKSKH 307
>At5g23320.1 68418.m02728 isoprenylcysteine carboxyl
methyltransferase family protein / ICMT family protein
similar to SP|O12947 Protein-S isoprenylcysteine
O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine
carboxylmethyltransferase) (Farnesyl cysteine carboxyl
methyltransferase) (FCMT) {Xenopus laevis}; contains
Pfam profile PF04140: Isoprenylcysteine carboxyl
methyltransferase (ICMT) family
Length = 197
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -1
Query: 236 SQILLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 123
SQ+LLS I FHIS LAI++ G S++ S L++
Sbjct: 14 SQMLLSLIFFHISEYILAITI---HGASNVTLSSLLIT 48
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 321 ATSFTTTTIGIVRF*VFSILFFSLGCFLFPNTFIFH*FPHFTSFFG 184
AT + T I V++ L + L F+F N+F + F SFFG
Sbjct: 7 ATKLSRNTNRITVILVYAFLEWLLMFFIFLNSFFTYFIVKFASFFG 52
>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 988
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 228 TFIFH*FPHFTSFFGYFSDFQPRMFRLDLFSGTVEPQHI 112
+ +F FP F+ DFQ +DLF+G EP HI
Sbjct: 810 SLLFRLFPKFSRCSSK-QDFQFPPHLIDLFNGRGEPDHI 847
>At3g18770.1 68416.m02382 expressed protein
Length = 625
Score = 26.6 bits (56), Expect = 7.8
Identities = 26/77 (33%), Positives = 34/77 (44%)
Frame = -1
Query: 350 PFFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAAFSSQILLSFIDFHISPPFLAISVT 171
P P F PL + S L+Y S L F + SF + SPP ++S +
Sbjct: 270 PMSPTFITDYVGSPLADPLKRFPSLPLSYGSPPLLPFQRRHSWSFDRYKASPP--SVSCS 327
Query: 170 FSPGCSDLICSLALLSH 120
SP SD S AL+SH
Sbjct: 328 PSPTRSD---SHALVSH 341
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,897,066
Number of Sequences: 28952
Number of extensions: 142121
Number of successful extensions: 417
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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