Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J16
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 93 7e-20
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 57 4e-09
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 48 3e-06
06_01_0286 - 2094920-2097805 29 1.4
03_05_1088 + 30301654-30303480 28 3.1
06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777 27 4.1
04_04_0264 + 24035282-24035686,24036877-24037118,24037230-240377... 27 4.1
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 27 4.1
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 27 4.1
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 27 5.5
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 26 9.5
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449... 26 9.5
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 26 9.5
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 93.1 bits (221), Expect = 7e-20
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = +3
Query: 102 LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPA 281
LP+LP++Y ALEP IS +IM LHH KHHATYV N N A E+L A AKGD I+ L A
Sbjct: 33 LPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSA 92
Query: 282 LKFNGGG 302
+KFNGGG
Sbjct: 93 IKFNGGG 99
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 57.2 bits (132), Expect = 4e-09
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Frame = +3
Query: 111 LPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKG-DIDTIISLA---- 275
L F ALEP IS+ + LH KH YV++LN ++L + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 276 -PALKFNGGGHI-NHSIFWKNLSP-NGGEPSDVLTKAVEKDFGS 398
P ++N + NH FW+++ P GG P + + +EKDFGS
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGS 173
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 48.0 bits (109), Expect = 3e-06
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Frame = +3
Query: 111 LPFEYSALEPVISRDIMNLHHSKHHATYVNNLN-----AAEEKLTQAQAKGDIDTIISLA 275
LP+ ALEP IS++ + H H +V LN + E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 276 PALKFNGGGHI-NHSIFWKNLSP-NGGEPSDVLTKAVEKDFGS 398
P F I NH +W+++ P GG+P + L K + +DFGS
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGS 231
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 57 GSVIRTIGASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQA 236
G + TIG +L L ++ L +I + +LH H NNL+ + +Q
Sbjct: 796 GHIPETIG---NMSSLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQL 852
Query: 237 QAKGDIDTII 266
Q GD D I
Sbjct: 853 QTLGDEDPYI 862
>03_05_1088 + 30301654-30303480
Length = 608
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 249 DIDTIISLAPALKFNGGGHINHSIFWKNLSPNGGEPSDVLTKAV 380
D+ ++ L F+G G + +FWK + G EP+ V AV
Sbjct: 428 DVTLWTAMISGLAFHGHGDVALDLFWK-MQAEGTEPNGVTLVAV 470
>06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777
Length = 248
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +3
Query: 87 RQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII 266
R++H +P L F S P S HH HHAT A+ +A G + I
Sbjct: 91 RRRHRVPILAFPISGGSPPPS------HHPPHHATATAPPFGADHTSAKAALTGILTAIF 144
Query: 267 SLA 275
S A
Sbjct: 145 SSA 147
>04_04_0264 +
24035282-24035686,24036877-24037118,24037230-24037750,
24038262-24038746
Length = 550
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 367 NTSEGSPPFGDKFFQKIEWL 308
+T++G+ FGDK+F EWL
Sbjct: 162 STTDGNGFFGDKYFDPEEWL 181
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 285 KFNGGGHINHSIFWKNLSPNGGEPSDVLT 371
+F+ GH+ S W N S NGGEP+ ++
Sbjct: 474 EFSELGHVIDSSPWLNDSYNGGEPNHAIS 502
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 41 GISQNWICYPHHRSVSSKTYASRITFRVQRSGTRDQ 148
G S+N HHR +S+T +SRI+ R RD+
Sbjct: 43 GSSRNHSSSGHHRDQNSRTSSSRISSNGPRKHDRDR 78
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 101 RMFLTRRSYGADNRSNSARCQHLEQEIIKPAG 6
R FL RR + + + A CQ + Q+++ P G
Sbjct: 562 REFLRRRGHRLRSTGSGAVCQFIVQDLLAPVG 593
>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
Length = 1141
Score = 26.2 bits (55), Expect = 9.5
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +3
Query: 18 YNLLFKMLASRRIGSVIRTIGASRQKHTLPELPFEYSALEPVISRDIM---NLHHSKHHA 188
Y LF ++ R ++ + A + L FE +L P R + HH+ +
Sbjct: 719 YPKLFASISKMRSLRTLKVLSAEGNQG----LNFEALSLPPQNLRKLHLTGRFHHAVMES 774
Query: 189 TYVNNLNAAEEKLTQAQAKGDIDTIISLA 275
+ + A EKL +K +ID +IS++
Sbjct: 775 NFFQTVGAKLEKLYLTGSKTNIDPLISIS 803
>06_01_0618 -
4492057-4492590,4492780-4493192,4493714-4494026,
4495257-4495828,4498324-4498600
Length = 702
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 87 RQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII 266
R+ H +P L F S P S HH HHAT A+ +A G + I
Sbjct: 120 RRHHRVPILTFPISGGAPPPSS-----HHPPHHATATAPPFGADHTSARAALTGILTAIF 174
Query: 267 SLA 275
S A
Sbjct: 175 SSA 177
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 114 PFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPALKFN 293
P Y+++ P + +I L + A NAAE K + A GD D + +L +
Sbjct: 39 PASYNSVPPPPADEIQ-LAKQRAQAIAARLFNAAEAKRPRLDAGGDDDDAGAGVGSLGSS 97
Query: 294 GGG 302
GGG
Sbjct: 98 GGG 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,689
Number of Sequences: 37544
Number of extensions: 220071
Number of successful extensions: 492
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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