Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J16
(399 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10) 91 2e-19
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 1e-12
SB_59271| Best HMM Match : LRR_1 (HMM E-Value=0.014) 28 3.2
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05) 28 3.2
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 27 4.3
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45) 27 5.6
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) 27 5.6
SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2) 26 9.8
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8
>SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10)
Length = 75
Score = 91.5 bits (217), Expect = 2e-19
Identities = 42/69 (60%), Positives = 52/69 (75%)
Frame = +3
Query: 39 LASRRIGSVIRTIGASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAE 218
L+SR+ + + R KHTLP+LP++Y ALEP I+ +IM LHHSKHHATYVNNLN AE
Sbjct: 9 LSSRK---AVLPVALVRAKHTLPDLPYDYDALEPTINTEIMRLHHSKHHATYVNNLNIAE 65
Query: 219 EKLTQAQAK 245
EK +AQAK
Sbjct: 66 EKCLEAQAK 74
>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 68.9 bits (161), Expect = 1e-12
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Frame = +3
Query: 90 QKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDI--DTI 263
+K+TLPELP++Y+ LEP I + +HH HHA Y LNAA ++ ++ + D+ +I
Sbjct: 245 EKYTLPELPYDYNELEPHIDEATLRVHHLGHHAAYTKKLNAALKEWRESGKEKDLASKSI 304
Query: 264 ISL-----------APALKFNGGGHINHSIFWKNLSPN 344
+ + + NGGG +NH+++W +SPN
Sbjct: 305 VEILRNNEQIPDKWRTDVINNGGGFVNHALYWATMSPN 342
>SB_59271| Best HMM Match : LRR_1 (HMM E-Value=0.014)
Length = 897
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 16 FIISCSR-CWHLAELDLLSAP*ERLVKNIRFPNYLSSTALWN 138
F+ CS CW L LL+ +L+ I FP+Y+ S N
Sbjct: 836 FVKVCSLYCWREDLLTLLARTKHQLIPKIPFPDYMRSVVTKN 877
>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
Length = 1382
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 174 SKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPALK 287
+ H TY N N T+ KGD DT++S L+
Sbjct: 7 TNHRTTYGNTNNIDSPYRTRNTGKGDTDTLLSYTNPLR 44
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 15 FYNLLFKMLASRRIGSVIRTIGASRQKHTLPELPFEYS 128
FY LFKML+ R+ V+ ++ +S ++L EL F ++
Sbjct: 243 FYQALFKMLSKRQ--CVVDSLESSESLYSLFELGFHFT 278
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 27.1 bits (57), Expect = 5.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 324 WKNLSPNGGEPS 359
WKNLSP+ G+PS
Sbjct: 560 WKNLSPDAGDPS 571
>SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)
Length = 853
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 391 KSFSTALVNTSEGSPPFGDKFFQKIE 314
K+FST L + + GSP GD F + +
Sbjct: 357 KAFSTTLASGAAGSPSAGDHFLARYQ 382
>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1256
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 AKGDIDTIISLAPALKFNGGGHINHSIFWK 329
AK +DTI+S+ P +GGG SI K
Sbjct: 960 AKDCLDTILSIQPKDSSSGGGETRESIVHK 989
>SB_46404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 219 EKLTQAQAKGDIDTIISLA-PALKFNGGGHINHSIFWKNLSPNG 347
E T+AQ D+ IS++ P G +N S+ KN+ PNG
Sbjct: 955 EDKTRAQIGSDLFRKISVSQPVFFLLAGKMLNPSVAGKNIVPNG 998
>SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)
Length = 638
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +3
Query: 102 LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLN------AAEEKLTQAQAKGDIDTI 263
L EL + +A+E R +HH+KHH LN E+KL K +I+T+
Sbjct: 148 LGELVVKCAAVELYHPRVQARVHHTKHHLYRSLGLNLIICDPPEEQKLPILSEKREINTL 207
Query: 264 I 266
I
Sbjct: 208 I 208
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 397 EPKSFSTALVNTSEGSPPFGDKFFQKIEWL 308
E +S + T G+PPF + F KI+ L
Sbjct: 1733 EESRYSLTAIATDAGTPPFSTQVFVKIDVL 1762
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,536,411
Number of Sequences: 59808
Number of extensions: 240593
Number of successful extensions: 517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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