Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J16
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   0.97 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   9.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   9.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +3

Query: 108 ELPFEYSALEP---VISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTI 263
           +LP E     P   ++   I +L    HH+T + N ++ + K          DTI
Sbjct: 291 DLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTI 345


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 269 SGTSTKIQWRWSHQPLYFLEEF 334
           SG   +I + WSH P  F E F
Sbjct: 105 SGLPPEIYYIWSHFPYVFGEAF 126


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +3

Query: 267 SLAPALKFNGGGHINHSIFWKNLSPNGGEPSDVLTKAVEKD 389
           ++AP L    GG     + W        EPS  +T    KD
Sbjct: 79  NIAPYLNQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKD 119


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 162 NLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIIS 269
           NL+  K + TY+N+ N      +++  K +  T +S
Sbjct: 539 NLYAMKMNETYINSGNKISLATSKSFIKANSQTEVS 574


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 153 DIMNLHHSKHHA 188
           D  ++HH+ HHA
Sbjct: 277 DNHHVHHANHHA 288


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 1   WIPAGFIISCS 33
           ++P GF+ SCS
Sbjct: 188 FVPEGFLTSCS 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,828
Number of Sequences: 438
Number of extensions: 1991
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)