Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J16
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondria... 132 1e-31
At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative / m... 122 9e-29
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 70 5e-13
At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero... 63 8e-11
At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast ... 57 4e-09
At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast ... 57 4e-09
At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast ... 57 4e-09
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi... 31 0.21
At3g06840.1 68416.m00811 expressed protein 29 1.1
At2g37940.1 68415.m04657 expressed protein 29 1.1
At1g32950.1 68414.m04058 subtilase family protein contains simil... 29 1.5
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 28 2.6
At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /... 28 2.6
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 27 3.5
>At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondrial
(SODA) / manganese superoxide dismutase (MSD1) identical
to manganese superoxide dismutase [Arabidopsis thaliana]
gi|3273751|gb|AAC24832
Length = 231
Score = 132 bits (318), Expect = 1e-31
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 4/107 (3%)
Frame = +3
Query: 90 QKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIIS 269
Q TLP+LP++Y ALEP IS +IM +HH KHH YV N N A E+L QA KGD T++
Sbjct: 29 QTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVK 88
Query: 270 LAPALKFNGGGHINHSIFWKNLSPN---GGE-PSDVLTKAVEKDFGS 398
L A+KFNGGGH+NHSIFWKNL+P+ GGE P L A++ FGS
Sbjct: 89 LQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGS 135
>At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative /
manganese superoxide dismutase, putative similar to
manganese superoxide dismutase (MSD1) [Arabidopsis
thaliana] gi|3273751|gb|AAC24832
Length = 241
Score = 122 bits (294), Expect = 9e-29
Identities = 57/118 (48%), Positives = 74/118 (62%), Gaps = 4/118 (3%)
Frame = +3
Query: 57 GSVIRTIGASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQA 236
G+ + S + +LP+LP+ Y ALEP IS +IM LHH KHH TYV N A L A
Sbjct: 23 GATMEPCLESMKTASLPDLPYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSA 82
Query: 237 QAKGDIDTIISLAPALKFNGGGHINHSIFWKNLSP---NGGE-PSDVLTKAVEKDFGS 398
A GD +++ L +KFNGGGH+NH+IFWKNL+P GG+ P D L A++ FGS
Sbjct: 83 MADGDHSSVVKLQSLIKFNGGGHVNHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGS 140
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 70.1 bits (164), Expect = 5e-13
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Frame = +3
Query: 30 FKMLASRRIGSVIRTIGASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLN 209
+K RR+G+ + G L P+ ALEP +SR+ ++ H KHH TYV NLN
Sbjct: 31 WKRNGKRRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYVENLN 90
Query: 210 AAEEKLTQAQAKGDIDTII------SLAPALKFNGGGHINHSIFWKNLSP-NGGEPSDVL 368
+ T A + ++ ++ PA N NH FW+++ P GG+P+ L
Sbjct: 91 -KQILGTDLDALSLEEVVLLSYNKGNMLPAFN-NAAQAWNHEFFWESIQPGGGGKPTGEL 148
Query: 369 TKAVEKDFGS 398
+ +E+DFGS
Sbjct: 149 LRLIERDFGS 158
>At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron
superoxide dismutase 3 (FSD3) identical to iron
superoxide dismutase 3 [Arabidopsis thaliana]
gi|3273757|gb|AAC24834
Length = 263
Score = 62.9 bits (146), Expect = 8e-11
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Frame = +3
Query: 114 PFEYSALEPVISRDIMNLHHSKHHATYVNNLN---AAEEKLTQAQAKGDID-TIISLAPA 281
P+ ALEP +SR + +H KHH YV+NLN +++L + I T + P
Sbjct: 56 PYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELIKATYNNGNPL 115
Query: 282 LKFNGGGHI-NHSIFWKNLSPNGGE-PSDVLTKAVEKDFGS 398
+FN + NH FW+++ P GG+ P + + ++KDFGS
Sbjct: 116 PEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGS 156
>At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 57.2 bits (132), Expect = 4e-09
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Frame = +3
Query: 96 HTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII--- 266
+ L PF ALEP +S+ + H KHH YV+NL + T+ + K ++ II
Sbjct: 11 YVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLK-KQVLGTELEGK-PLEHIIHST 68
Query: 267 ----SLAPALKFNGGGHINHSIFWKNLSP-NGGEPSDVLTKAVEKDFGS 398
L PA N NH FW+++ P GG+PS L +E+DF S
Sbjct: 69 YNNGDLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTS 116
>At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 57.2 bits (132), Expect = 4e-09
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Frame = +3
Query: 96 HTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII--- 266
+ L PF ALEP +S+ + H KHH YV+NL + T+ + K ++ II
Sbjct: 11 YVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLK-KQVLGTELEGK-PLEHIIHST 68
Query: 267 ----SLAPALKFNGGGHINHSIFWKNLSP-NGGEPSDVLTKAVEKDFGS 398
L PA N NH FW+++ P GG+PS L +E+DF S
Sbjct: 69 YNNGDLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTS 116
>At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 57.2 bits (132), Expect = 4e-09
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Frame = +3
Query: 96 HTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII--- 266
+ L PF ALEP +S+ + H KHH YV+NL + T+ + K ++ II
Sbjct: 11 YVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLK-KQVLGTELEGK-PLEHIIHST 68
Query: 267 ----SLAPALKFNGGGHINHSIFWKNLSP-NGGEPSDVLTKAVEKDFGS 398
L PA N NH FW+++ P GG+PS L +E+DF S
Sbjct: 69 YNNGDLLPAFN-NAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTS 116
>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
Phosphotransferase enzyme family, PF00441: Acyl-CoA
dehydrogenase C-terminal domain, PF02770: Acyl-CoA
dehydrogenase middle domain
Length = 824
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 385 FSTALVNTSEGSPPFGDKFFQKIEWLM*PPPLNFSAGA 272
F L +TSEG P K F+ ++WL P S GA
Sbjct: 186 FKQYLASTSEGKPERNPKMFELVDWLRKNIPAEDSTGA 223
>At3g06840.1 68416.m00811 expressed protein
Length = 187
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 71 HHRSVSSKTYASRITFRVQRSGTRDQP 151
H R SSK+Y + + F++Q+ ++D P
Sbjct: 37 HKRETSSKSYTNGLQFKIQKPISKDNP 63
>At2g37940.1 68415.m04657 expressed protein
Length = 305
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +3
Query: 102 LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDT 260
LPELP + L PVIS+D H N ++ A+ + +AQ G ID+
Sbjct: 244 LPELPDRTAVLLPVISKD--RTKEENHKLLNGNGVDPADWR-PRAQVNGKIDS 293
>At1g32950.1 68414.m04058 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 773
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 394 PKSFSTALVNTSEGSPPFGDKFFQKIEWLM*PPPLNFSAG 275
P +F +A+V T+ + PFG++ + L P P ++ G
Sbjct: 573 PAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDPFDYGGG 612
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 111 LPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPAL 284
LP E S L+ + + HHA NL AAE+K+ +A +K + D I+ P L
Sbjct: 228 LPLEASLLDSITDGSMKG-----HHAAGDLNLEAAEKKVVEAMSK-ENDMPIAWEPCL 279
>At3g54020.1 68416.m05973 phosphatidic acid phosphatase-related /
PAP2-related
Length = 305
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 102 LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKG 248
LPELP +AL PVIS+D H N ++ A+ + +AQ G
Sbjct: 245 LPELPDRTTALLPVISKD--RTKEESHKLLNGNGVDPADRR-PRAQVNG 290
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 78 GASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDID 257
G ++H E F+ EPV+ ++ + H K A+ + N N + Q +K D +
Sbjct: 27 GGQEKEHVPVEKSFDSEEREPVVLKEEKPVKHEK-EASILGNKNQMDTGDVQEVSKNDFE 85
Query: 258 TII 266
+
Sbjct: 86 ATL 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,914,979
Number of Sequences: 28952
Number of extensions: 175677
Number of successful extensions: 469
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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