Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J15
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   243   5e-65
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    31   0.44 
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    29   1.0  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    29   1.0  
U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical pr...    29   1.0  
U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical ...    27   4.1  
L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical...    27   7.2  
Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    26   9.5  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  243 bits (594), Expect = 5e-65
 Identities = 115/139 (82%), Positives = 122/139 (87%)
 Frame = +1

Query: 1   LVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYLSPPESLSHIGQ 180
           LVSNLYVISQMLA KF GNF +NLLG W+D  G    R+YP GGLCYYLSPPESL HI +
Sbjct: 297 LVSNLYVISQMLAGKFGGNFFINLLGTWSDNTG---YRSYPTGGLCYYLSPPESLGHIFE 353

Query: 181 DPIHALLYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRY 360
           DPIH ++YI FMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHR+ SMIHELNRY
Sbjct: 354 DPIHCIIYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHREKSMIHELNRY 413

Query: 361 IPTAAAFGGLCIGALSVLA 417
           IPTAAAFGGLCIGALSV A
Sbjct: 414 IPTAAAFGGLCIGALSVTA 432


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = +1

Query: 208 FFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 381
           FF+     FF   +  +  + AK  A+Q+  Q+ V+R H +++++HE++  +PT+  F
Sbjct: 194 FFIPTLLMFF--VYFKIYQAFAKHRARQIYRQK-VIRKHIESTILHEISHVLPTSDEF 248


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 312 HHLLLFQLLRNILSGGSGDIDPGLREERAGAEHEEDVEQR 193
           H ++    +R + S  S  I+ GLRE+   A+HE + ++R
Sbjct: 847 HRIVQLDEIREVESSNSTKIEKGLREQLEQAQHELEKKKR 886


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 312 HHLLLFQLLRNILSGGSGDIDPGLREERAGAEHEEDVEQR 193
           H ++    +R + S  S  I+ GLRE+   A+HE + ++R
Sbjct: 847 HRIVQLDEIREVESSNSTKIEKGLREQLEQAQHELEKKKR 886


>U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical
           protein F47E1.2 protein.
          Length = 744

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +1

Query: 103 GPARAYPVGGLC----YYLSPPESLSHIGQDPIHALLYIFFMLGSCAFFSKTWI 252
           GP   Y +G  C    Y L+PP  L+      I A    F  +GS A F  T +
Sbjct: 311 GPICGYMIGSFCNKFYYTLNPPNGLTPADPTWIGAWWMGFLFIGSIALFPSTML 364


>U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical
           protein F01E11.5b protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +1

Query: 208 FFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQM-----VMRGHRDNSMIHELNRYIPTA 372
           FF+     FF   +  +  + AK  A+Q+  Q++     V+R H +++++HE++  +PT+
Sbjct: 68  FFIPTLLMFF--VYFKIYQAFAKHRARQIYRQKLAVSSHVIRKHIESTILHEISHVLPTS 125

Query: 373 AAF 381
             F
Sbjct: 126 DEF 128


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +1

Query: 208 FFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQM-----VMRGHRDNSMIHELNRYIPTA 372
           FF+     FF   +  +  + AK  A+Q+  Q++     V+R H +++++HE++  +PT+
Sbjct: 194 FFIPTLLMFF--VYFKIYQAFAKHRARQIYRQKLAVSSHVIRKHIESTILHEISHVLPTS 251

Query: 373 AAF 381
             F
Sbjct: 252 DEF 254


>AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4a protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 PRAPIPSGGSATTCPPRSPSRTSVRT 184
           P  P+PS G+ +T PP  P+ T   T
Sbjct: 212 PLTPLPSPGAQSTAPPVFPTSTPTPT 237


>L23651-8|AAK84495.1|  500|Caenorhabditis elegans Hypothetical
           protein C29E4.10 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 116 PIPSGGSATTCPPRSPSRTSVRTP 187
           P+ S G  TT P  +P R +++TP
Sbjct: 330 PVNSFGILTTLPVSTPKRVTIKTP 353


>AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical
           protein Y41D4B.6 protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 300 LFQLLRNILSGGSGDIDPGL--REERAGAEHEEDVEQRVNGVLTD 172
           L   L+N +SGG   I PG+     R+ +E E++ E   N   TD
Sbjct: 214 LISSLKNFISGGRSSIIPGISVTMSRSDSESEKNDEGNKNEENTD 258


>Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical
           protein F58B3.7 protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 201 EQRVNGVLTDVREGLRGGQVVAEPP 127
           EQ ++  L+  + G+RGG +VAE P
Sbjct: 232 EQGMSTALSIEKTGVRGGNIVAEAP 256


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 89  TWGAAAPRAPIPSGGSATTCPP 154
           +WGAA P AP  S G+A   PP
Sbjct: 344 SWGAA-PAAPSTSWGAAPAAPP 364


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1   LVSNLY-VISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVG 129
           + SNL  V+ Q+   K +G   + +  + ADVGG  P R + VG
Sbjct: 306 ITSNLKKVVEQVALAKAAGKSSMTVSAL-ADVGGSKPKREHSVG 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,530,573
Number of Sequences: 27780
Number of extensions: 158694
Number of successful extensions: 649
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)