Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J15
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78720.1 68414.m09175 protein transport protein sec61, putati... 194 2e-50
At2g34250.1 68415.m04190 protein transport protein sec61, putati... 188 2e-48
At1g29310.1 68414.m03583 protein transport protein sec61, putati... 186 4e-48
At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondri... 35 0.025
At2g21600.1 68415.m02569 RER1B protein identical to SP|O48671 RE... 30 0.54
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 28 2.2
At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transfera... 28 2.9
At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727 ... 27 3.8
At4g18570.1 68417.m02749 proline-rich family protein common fami... 27 3.8
At4g31510.1 68417.m04475 expressed protein low similarity to MTD... 27 5.1
At3g01270.1 68416.m00033 pectate lyase family protein similar to... 27 5.1
At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7) ide... 27 6.7
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 27 6.7
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 27 6.7
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 27 6.7
At1g48950.1 68414.m05485 expressed protein 27 6.7
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa... 27 6.7
At5g09850.1 68418.m01139 transcription elongation factor-related... 26 8.9
At1g77030.1 68414.m08970 glycine-rich protein 26 8.9
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c... 26 8.9
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c... 26 8.9
>At1g78720.1 68414.m09175 protein transport protein sec61, putative
similar to SP|P38377 Protein transport protein Sec61
alpha subunit isoform 1 (Sec61 alpha- 1) {Canis
familiaris}; contains Pfam profile PF00344: eubacterial
secY protein
Length = 475
Score = 194 bits (473), Expect = 2e-50
Identities = 91/139 (65%), Positives = 111/139 (79%)
Frame = +1
Query: 1 LVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYLSPPESLSHIGQ 180
LVSN+Y ISQ+L KF GNFLVNL+G W + G ++ PVGG+ YY++ P SL+ +
Sbjct: 300 LVSNIYFISQILYRKFGGNFLVNLIGTWKESEYSG--QSIPVGGIAYYITAPSSLAEMAT 357
Query: 181 DPIHALLYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRY 360
P HAL Y+ FML +CA FSKTWI+VSGSSAKDVA+QL+EQQMVM GHRD+++ ELNRY
Sbjct: 358 HPFHALFYLVFMLAACALFSKTWIEVSGSSAKDVARQLREQQMVMPGHRDSNLQKELNRY 417
Query: 361 IPTAAAFGGLCIGALSVLA 417
IPTAAAFGGLCIGAL+VLA
Sbjct: 418 IPTAAAFGGLCIGALTVLA 436
>At2g34250.1 68415.m04190 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 188 bits (457), Expect = 2e-48
Identities = 92/139 (66%), Positives = 108/139 (77%)
Frame = +1
Query: 1 LVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYLSPPESLSHIGQ 180
LVSNLY ISQ+L KFSGNF VNLLG W + G ++ PV GL Y ++ P S S +
Sbjct: 300 LVSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSG--QSIPVSGLAYLITAPASFSDMAA 357
Query: 181 DPIHALLYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRY 360
P HAL YI FML +CA FSKTWI+VSGSSA+DVAKQLKEQQMVM GHR++++ ELNRY
Sbjct: 358 HPFHALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRY 417
Query: 361 IPTAAAFGGLCIGALSVLA 417
IPTAAAFGG+CIGAL+VLA
Sbjct: 418 IPTAAAFGGVCIGALTVLA 436
>At1g29310.1 68414.m03583 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 186 bits (454), Expect = 4e-48
Identities = 91/139 (65%), Positives = 108/139 (77%)
Frame = +1
Query: 1 LVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYLSPPESLSHIGQ 180
LVSNLY ISQ+L KFSGNF VNLLG W + G ++ PV GL Y ++ P S + +
Sbjct: 300 LVSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSG--QSIPVSGLAYLITAPASFADMAA 357
Query: 181 DPIHALLYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRY 360
P HAL YI FML +CA FSKTWI+VSGSSA+DVAKQLKEQQMVM GHR++++ ELNRY
Sbjct: 358 HPFHALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRY 417
Query: 361 IPTAAAFGGLCIGALSVLA 417
IPTAAAFGG+CIGAL+VLA
Sbjct: 418 IPTAAAFGGVCIGALTVLA 436
>At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondrial,
putative similar to mitochondrial RNA helicase
[Arabidopsis thaliana] GI:5823579; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 776
Score = 34.7 bits (76), Expect = 0.025
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = -2
Query: 237 EERAGAEHEEDVEQRVNGVLTDVREGLRGGQVVAEPPDGIGARGAAAPHVRPH 79
EE G+E ++ E+ + L+DV EGL VVAE D IG+ A A + R H
Sbjct: 91 EESVGSESDDYDEEGLINELSDVDEGLLNDSVVAE-TDEIGSEAARALNDRYH 142
>At2g21600.1 68415.m02569 RER1B protein identical to SP|O48671 RER1B
protein (AtRER1B) {Arabidopsis thaliana}
Length = 195
Score = 30.3 bits (65), Expect = 0.54
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 259 SGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSV 411
SGS A V K++ E V + + D + H NR+I T F C+ S+
Sbjct: 8 SGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSI 58
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 294 QLLRNILSGGSGDIDPGLREERAGAEHEEDVEQRVNGVL-TDVREGLRGG 148
QLL+++ SG S + GLR + G++ DV ++ VL + V +GL G
Sbjct: 670 QLLQSLFSGSSRSDETGLRRGQ-GSDDRVDVSSAMSQVLESPVLDGLLAG 718
>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 481
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 118 YPVGGLCYYLSPPES----LSHIGQDPIHALLYIFFMLGSC 228
YP+G LC + E+ L + + P ++LYI F G C
Sbjct: 235 YPIGPLCRPIQSSETDHPVLDWLNEQPNESVLYISFGSGGC 275
>At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727
myosin heavy chain PCR43 [Arabidopsis thaliana]
Length = 556
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 199 LYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 306
+ IFF C F +TW+ +AKD+ K L E +
Sbjct: 29 ILIFFF---CLMFIQTWLHSEQEAAKDLRKALSEAE 61
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 122 PSGGSATTCPPRSPSRTSVRTPF 190
PS GSATT PP +PS+ F
Sbjct: 41 PSSGSATTKPPINPSKPGFTRSF 63
>At4g31510.1 68417.m04475 expressed protein low similarity to MTD1
[Medicago truncatula] GI:9294810
Length = 214
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 253 DVSGSSAKDVAKQLKEQQMVMRGHRD 330
D SS+ D +LKE++M M HRD
Sbjct: 168 DDDDSSSDDETSKLKEKRMKMTNHRD 193
>At3g01270.1 68416.m00033 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 475
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 264 SGDIDPGLREERAGAEHEEDVEQRVNGVLTDVREGLRG 151
S D++ G EE+A A EEDV + ++ R L G
Sbjct: 68 STDVE-GTEEEKAVASEEEDVIEMISSPTNSTRRSLTG 104
>At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7)
identical to pseudo-response regulator 7 GI:10281004
from [Arabidopsis thaliana]
Length = 727
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 240 REERAGAEHEEDVEQRVNGVLTDVREGLRGG 148
R E +H E E++ NG+ DVR G GG
Sbjct: 26 RVESRTEKHSE--EEKTNGITMDVRNGSSGG 54
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 92 WGAAAPRAPIPSGGSATTCPPRSPSR 169
+GAA+ R P+PS A+ P + SR
Sbjct: 117 YGAASTRVPLPSSAPASELSPEAYSR 142
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 92 WGAAAPRAPIPSGGSATTCPPRSPSR 169
+GAA+ R P+PS A+ P + SR
Sbjct: 117 YGAASTRVPLPSSAPASELSPEAYSR 142
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 92 WGAAAPRAPIPSGGSATTCPPRSPSR 169
+GAA+ R P+PS A+ P + SR
Sbjct: 117 YGAASTRVPLPSSAPASELSPEAYSR 142
>At1g48950.1 68414.m05485 expressed protein
Length = 608
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 261 GDIDPGLREERAGAEHEEDVEQRVNGVLTDVREGLRGGQ 145
GD+ ++ AE+ DV Q N V+ D+ E GG+
Sbjct: 446 GDVSSIQDQQSRTAENNGDVTQNSNQVMNDIGEKADGGR 484
>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 634
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 417 GEHRESSDTKTTEGGRRR 364
G++RESSDT+T G R R
Sbjct: 58 GDNRESSDTRTESGHRPR 75
>At5g09850.1 68418.m01139 transcription elongation factor-related
low similarity to SP|P10712 Transcription elongation
factor S-II (Transcription elongation factor A) {Mus
musculus}
Length = 353
Score = 26.2 bits (55), Expect = 8.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 285 RNILSGGSGDI-DPGLREERAGAEHEEDVEQRVNGVLTDVREGLRGGQVVAEPPD 124
RN GG G++ + + G HEE E+ GV E +R V E D
Sbjct: 57 RNCDFGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDD 111
>At1g77030.1 68414.m08970 glycine-rich protein
Length = 349
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -2
Query: 267 GSGDIDPGLREERAGAEHEEDVEQRVNGVLTDVREGLRGG 148
G G D G +R G D R G T R G RGG
Sbjct: 232 GGGGRDFGSSSDRGGRSGGRDFGGRRGGASTSSRGGKRGG 271
>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
Glycerol-3-phosphate acyltransferase, chloroplast
precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
thaliana}; contains Pfam profile PF01553:
Acyltransferase
Length = 459
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 100 GGPARAYPVGGLCYYLSPP 156
G P YP+ LCY + PP
Sbjct: 356 GAPGHIYPMSLLCYDIMPP 374
>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
Glycerol-3-phosphate acyltransferase, chloroplast
precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
thaliana}; contains Pfam profile PF01553:
Acyltransferase
Length = 459
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 100 GGPARAYPVGGLCYYLSPP 156
G P YP+ LCY + PP
Sbjct: 356 GAPGHIYPMSLLCYDIMPP 374
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,245,770
Number of Sequences: 28952
Number of extensions: 156077
Number of successful extensions: 671
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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