Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J14
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 30 0.26
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 27 1.8
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 1.8
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 26 3.2
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 26 4.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 4.2
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 26 4.2
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 25 5.6
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 5.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 5.6
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 7.4
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 7.4
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 25 7.4
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 7.4
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.8
SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyc... 25 9.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.8
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 522 NNLHSSWDLRCDSYKVNIQTLDVGCKLREFVE 427
++L + WD + KV+ QTL GC E V+
Sbjct: 558 DSLRNKWDPYTEGEKVSFQTLSAGCNREEAVQ 589
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 52 WLLINILRYKMARLLFVFLIPALLVLSIPLYLFVLKS 162
WL +N + FV++ PA L++ +PL+ + S
Sbjct: 260 WLFLNPTTLLFLLISFVYIKPARLLIYVPLFFIFVYS 296
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 215 TKESRTPALSRIKYRLAKLKSKISKTASKDRELSLRPSKVL 337
T + T + R+ YRL KLK+ + TA R +SL K L
Sbjct: 294 TADMPTVSWQRVLYRLLKLKNVNALTAEDGRVVSLHNMKRL 334
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = +1
Query: 223 KQDTSIKPYKVSFGETEIKDLKDRIKRSRTFTPPLEGIAFEYGFNTKELDHWLKYWSEEY 402
KQ+T ++ +++S E + ++ KRS + E + ++T +L+ + K + ++Y
Sbjct: 56 KQETKLRDFRLSAAEARKRYIEAVEKRSSSQREVNELLQRRSSWSTIDLERFTKLYRDDY 115
Query: 403 PFAERQ 420
E +
Sbjct: 116 SNKEEE 121
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 254 TLYGLMLVSCFPLCCGGPHHASKSISGKGGVLLSTNKYRGILRTSKAG 111
T + L++ P+CC PH S SG + L R ILR G
Sbjct: 271 TYHALVVFLFLPVCCLDPHFLHLSFSGVLFIFLFVEGIR-ILRLKPFG 317
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 380 SNTGQKNTRLLKGKTSSTNSLSLQPT 457
S+TG ++ LL TS T S S+ PT
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSIPPT 402
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.8 bits (54), Expect = 4.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Frame = +1
Query: 370 DHWLKYWSEEYPFAERQNFLNKF 438
++W YW YPF + K+
Sbjct: 39 ENWKSYWKSHYPFVKNDKGKKKY 61
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 400 YPFAERQNFLNKFPQFTTN 456
YPFA +N F QFT N
Sbjct: 333 YPFASNDPLMNYFEQFTEN 351
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 202 PTTRLNPYQVKAEYF*VQTNIEEY*GPV 119
PT RL P K+ Y +Q +E+Y G +
Sbjct: 91 PTLRLKPKSQKSAYGYLQVGVEKYGGGI 118
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 391 SEEYPFAERQNFLNKFPQFTTNIQGLNIHFIRVTP 495
+ ++P+A+R L PQF + I G I+ + P
Sbjct: 581 ANDHPYAQRVFSLTCAPQFFSYINGYQIYLQQTNP 615
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -2
Query: 356 LKPYSKAIPSRGGVKVRDLLMRSLRSLI 273
L+P+S A+ + +K++DL++R + +I
Sbjct: 1265 LQPFSHAMENSQDLKIKDLVLRCIDQMI 1292
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 360 KRTRSLAQILVRRIPVC*KAKLPQQIPSVYNQH-PGFEYSLYKSHTE 497
KR +++ +P+C KAK+ + Y H PG+ Y S T+
Sbjct: 492 KRWHKFRELVKNGVPLCYKAKVWLECSGAYQLHSPGY-YEELLSRTD 537
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 223 KQDTSIKPYKVSFGETEIKDLKDRI 297
KQ+ S+K + SFG +E K+ +R+
Sbjct: 341 KQNESVKQGETSFGNSEFKNPLERV 365
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 460 QGLNIHFIRVTPKVPAGVEIVPLLLVHGWP 549
Q L +F+R P++ A + I+P L++ +P
Sbjct: 265 QALLGYFVRYHPEIAAIIGILPQTLINSYP 294
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 196 WWGPPQHKGKQDTSIKPYKVSFGETEIKDLKDRIKRSRTFTPPLEGIAFEYGFNTKELDH 375
W G P K K+ + P +IKD++ +K + PLE E TK ++
Sbjct: 297 WTGNP--KDKELVGLIPLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKLRTKLIED 354
Query: 376 W 378
W
Sbjct: 355 W 355
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +2
Query: 68 FFVIKWLVYCLYF*YQPYWSSVFLYICLYLKVLRLYLIWI 187
+F+I LV C+ Y +W ++ + + + Y WI
Sbjct: 469 YFII--LVVCIASLYSAFWPVIYRFYFISALIFTSYSFWI 506
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 22 FDIKIN*DNTWLLINILRYKMARLLFVFLIPALLVLSIPL 141
F + ++ W++ + + K A++ F +P +L+ +PL
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPL 163
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 22 FDIKIN*DNTWLLINILRYKMARLLFVFLIPALLVLSIPL 141
F + ++ W++ + + K A++ F +P +L+ +PL
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPL 163
>SPAC11D3.02c |||ELLA family acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 150
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 214 VVVDPTTRLNPYQVKAEYF*VQTNIEEY*GPVRLVSKIQTIDEPFY 77
VVVDP R N Y K ++T+ +E+ V Q +P Y
Sbjct: 79 VVVDPDERKNGYGRKLMLQALETSKQEFSSSKTFVLSSQEYAQPLY 124
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 22 FDIKIN*DNTWLLINILRYKMARLLFVFLIPALLVLSIPL 141
F + ++ W++ + + K A++ F +P +L+ +PL
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPL 163
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 22 FDIKIN*DNTWLLINILRYKMARLLFVFLIPALLVLSIPL 141
F + ++ W++ + + K A++ F +P +L+ +PL
Sbjct: 124 FSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPL 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,929
Number of Sequences: 5004
Number of extensions: 50435
Number of successful extensions: 196
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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