Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J14
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1288 + 29014144-29014376,29015192-29015771,29015929-290163... 33 0.20
03_05_0492 - 24874517-24874960,24875672-24875815,24876214-248762... 30 1.1
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 29 1.9
02_02_0334 - 9051609-9051652,9052065-9052176,9052771-9052827,905... 29 3.3
01_01_0862 + 6714041-6714358,6714462-6714603,6715511-6715735,671... 29 3.3
03_01_0245 + 1916718-1917443,1917534-1917719 28 4.3
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364... 28 5.7
03_02_0818 - 11496429-11496767,11496847-11496903,11497040-114971... 28 5.7
08_02_0059 - 11778739-11780998,11781744-11781751 27 7.5
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 27 10.0
06_03_0701 - 23655762-23655857,23656067-23656141,23656245-236563... 27 10.0
04_03_0013 + 9393423-9393747,9396577-9396657,9397491-9397594,939... 27 10.0
>06_03_1288 +
29014144-29014376,29015192-29015771,29015929-29016320,
29016636-29016663,29017207-29017417,29017551-29017819
Length = 570
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 109 IPALLVLSIPLYLFVLKSTPPLPDMDLDAWWGP 207
+P LL+L I +YLFVL + L + +L AW P
Sbjct: 49 MPPLLILGIVIYLFVLVAVVELEEGELVAWSSP 81
>03_05_0492 -
24874517-24874960,24875672-24875815,24876214-24876282,
24876452-24876570,24878292-24878580
Length = 354
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = -2
Query: 269 VSPN----DTLYGLMLVSCFPLCCGGPHHASKSISGKGGVLLSTNKYRGILRTSKAGIKN 102
VSPN D YGLM GG + + ++ +Y GILR +A K
Sbjct: 137 VSPNYPCIDQCYGLMTTYAMKSMSGGRMLLPLNAPADAPIYVNAKQYEGILRRRRARAKA 196
Query: 101 TNNRRAIL*RRMFIN 57
R + R+ +++
Sbjct: 197 QRENRLVKGRKPYLH 211
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 29.5 bits (63), Expect = 1.9
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 301 RSRTFTPPLEGIAFEYGFNTKELDHWLKYWSEEYPFAERQNFLNKFPQFT-TNIQGL--N 471
RS P +G A +GF T DH +K+W EY ++ + N Q + TN++ L N
Sbjct: 347 RSIVLIPNEDGTAGAWGFVTGSADHDVKFW--EYQLMQKSD--NDSKQLSVTNVKTLKMN 402
Query: 472 IHFIRVTPKVPAGVEIVPLLL 534
+ VT P G I LL
Sbjct: 403 DDVLAVTIS-PTGNHIAVALL 422
>02_02_0334 -
9051609-9051652,9052065-9052176,9052771-9052827,
9053126-9053191,9053391-9053515,9053566-9053625,
9054347-9054418,9055332-9055392
Length = 198
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Frame = -2
Query: 320 GVKVRDLLMRSLRSLISVSPNDTLYGLMLVSCFPLC---CGGPHHASKSISGKGGVLLST 150
GV V +++ +++I ++P + ++C PLC P++ ++ + V++
Sbjct: 52 GVNVALSMLKFYKTIIGLAPLPFDINYISIACSPLCEQEKYHPYYPQAAVMCQLAVVMDM 111
Query: 149 NKYRGILRTSKAG-----IKNTNNRRAIL*RRMFINSQVLSQFIFISKDTCAF 6
G++R S + N + R AIL + M + L + + TC F
Sbjct: 112 IPQGGLMRKSYQSNDSLLVNNKSIRCAILIKNMTTKVKKLDLYAALKNITCIF 164
>01_01_0862 +
6714041-6714358,6714462-6714603,6715511-6715735,
6715769-6716763,6717327-6717381,6717469-6717621,
6718130-6718299,6718388-6718870
Length = 846
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 103 FLIPALLVL-SIPLYLFVLKSTP--PLPDMDLDAWWGPPQHKGKQDTSIKPYKVSFGE 267
F PA+L+ ++P+ +VL S LP+ W G G++ ++PY +SF E
Sbjct: 76 FSWPAVLIDDALPINCYVLTSQRIGRLPNGQSTGWKGQSTLIGRKRIPLRPYAISFSE 133
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 218 LCCGGPHHASKSISGKGG 165
+CC GPHH S G GG
Sbjct: 31 ICCIGPHHKPSSAVGGGG 48
>11_08_0022 +
27733247-27733935,27735722-27735981,27736213-27736404,
27737695-27738686
Length = 710
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 193 AWWGPPQHKGKQDTSIKPYKVSFGETEIKDLKDRIKRSRTFTP 321
AW GP + S P + +G EI+D+ R +TP
Sbjct: 65 AWPGPDDFNVTCNHSFSPPRPYYGNIEIRDISVAAGEMRVYTP 107
>03_02_0818 -
11496429-11496767,11496847-11496903,11497040-11497153,
11497298-11497408,11497502-11497624,11497918-11498007,
11498088-11498213,11498317-11498370,11498464-11498544,
11498626-11498733,11498852-11498923,11499031-11499093,
11500003-11500194
Length = 509
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/71 (23%), Positives = 28/71 (39%)
Frame = +1
Query: 205 PPQHKGKQDTSIKPYKVSFGETEIKDLKDRIKRSRTFTPPLEGIAFEYGFNTKELDHWLK 384
PP K +TS +FG++E + +K+ + T E I+ N L K
Sbjct: 281 PPVFDEKYETSFDDVDAAFGDSEDRHVKEETEDQPTSMNAFELISLNQALNLDNLFEAKK 340
Query: 385 YWSEEYPFAER 417
+ E F +
Sbjct: 341 EYKRETRFTSQ 351
>08_02_0059 - 11778739-11780998,11781744-11781751
Length = 755
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 296 MRSLRSLISVSPNDTLY-GLMLVSCFPLCCGGPHHASKSIS 177
+RS+ ++ P T + SCFP CC H S IS
Sbjct: 383 LRSIFAIFEEIPASTAEESVSSPSCFPTCCSCEQHRSPKIS 423
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 221 ESRTPALSRIKYRLAKLKSKISKTASKDRELSLRPSKVLPLSMASIQ 361
+ + P L R+K ++++LKSKI K+ +K+ + SK M S+Q
Sbjct: 308 DKKQPELLRLKEQISRLKSKI-KSCNKEIDKKKDDSKKHLEEMKSLQ 353
>06_03_0701 -
23655762-23655857,23656067-23656141,23656245-23656301,
23656385-23656501,23657286-23657405,23657491-23657613,
23657967-23658056,23658184-23658309,23658809-23658901,
23658947-23659021,23659115-23659222,23659481-23659552,
23659673-23659735,23660850-23661017
Length = 460
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = -2
Query: 356 LKPYSKAIPSRGGVKVRDLLMRSLRSLISVSPNDTLYGLMLVSCFPLCCGGPHHASKSIS 177
LKP + + SRG +KV D + +L + G V CG P++ + +
Sbjct: 136 LKPENLLLDSRGNLKVSDFGLSTLAQKKCSDWDFFFEGFQGVGLLHTTCGTPNYVAPEVL 195
Query: 176 GKGG 165
G
Sbjct: 196 SNNG 199
>04_03_0013 +
9393423-9393747,9396577-9396657,9397491-9397594,
9397777-9397832,9398713-9398807,9400900-9401067,
9401181-9401341
Length = 329
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 348 ILKGNTFEGRSESSRSFDAVFEIFDFSFAKRYFIR 244
+L N + SE+ SFD + + +FSF +R+ ++
Sbjct: 198 VLSPNIYRTTSEALESFDYISKHGNFSFTERFAVK 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,798
Number of Sequences: 37544
Number of extensions: 307436
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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