Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J14
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.63 
SB_59366| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-23)                 29   2.5  
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)                       29   2.5  
SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)                   29   2.5  
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     29   2.5  
SB_46736| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 157  KSTPPLPDMDLDAWWGPPQHKGKQDTSIKPYKVSFGE--TEIKDLKDRIKRSRTFTPPLE 330
            +ST   P M  D  W P +H  +Q+T  KP  + F +  ++ K     ++ SRT +P  +
Sbjct: 935  ESTVDCPLMFDDNRWHPFRHSAQQETKPKPGNMKFFDSLSKPKHYNSHLQSSRTGSPETD 994

Query: 331  GI 336
             I
Sbjct: 995  DI 996


>SB_59366| Best HMM Match : 7tm_1 (HMM E-Value=5.2e-23)
          Length = 363

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +2

Query: 68  FFVIKWLVYCLYF*YQPYWSSVFLYICLYLKVLRLYLIWI*TRGGVHHNTKESRTPALSR 247
           +  + +L Y   F      ++ F+Y+  Y KV + +   + +   +H  T+E      +R
Sbjct: 159 YLKVGYLRYHFVFTNTAVVATFFVYMLTYFKVFKRFKKEVKSWDRLHEGTEE------NR 212

Query: 248 IKYRLAKLKSKISKT 292
           +K +  KL+ KI+KT
Sbjct: 213 VKKQATKLEKKITKT 227


>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
          Length = 382

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 239 LSRIKYRLAKLKSKISKTASKDRELSLRPSK 331
           L++ KY+LAK K K++K   K  +   +P+K
Sbjct: 336 LAKAKYKLAKAKYKLAKAKYKPAKAKYKPAK 366



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 239 LSRIKYRLAKLKSKISKTASKDRELSLRPSK 331
           L++ KY+LAK K K++K   K  +   +P+K
Sbjct: 329 LAKAKYKLAKAKYKLAKAKYKLAKAKYKPAK 359


>SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)
          Length = 169

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 239 LSRIKYRLAKLKSKISKTASKDRELSLRPSK 331
           L++ KY+LAK K K++K   K  +   +P+K
Sbjct: 123 LAKAKYKLAKAKYKLAKAKYKPAKAKYKPAK 153



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 239 LSRIKYRLAKLKSKISKTASKDRELSLRPSK 331
           L++ KY+LAK K K++K   K  +   +P+K
Sbjct: 116 LAKAKYKLAKAKYKLAKAKYKLAKAKYKPAK 146


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 154  LKSTPPLPDMDLDAWWGPPQHKGKQDTSIKPYKVSFGETEIKDLKDRIKRSR 309
            L S  P  D D+D      + K K D      K+   E +IKDL+ ++++++
Sbjct: 900  LLSKEPSSDQDIDKMRKETEEKFKTDLQDTELKLKDAEAKIKDLETQLEQAK 951


>SB_46736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 239 LSRIKYRLAKLKSKISKTASKDRELSLRPSK 331
           L++ KY+LAK K K++K   K  +   +P+K
Sbjct: 61  LAKAKYKLAKAKYKLAKAKYKLAKAKYKPAK 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,762
Number of Sequences: 59808
Number of extensions: 351410
Number of successful extensions: 1200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)