Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J14
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    94   5e-20
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    79   2e-15
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p...    31   0.55 
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p...    31   0.55 
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact...    31   0.55 
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily as...    28   3.9  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    27   6.8  
AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein ...    27   9.0  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
 Frame = +1

Query: 217 KGKQD-TSIKPYKVSFGETEIKDLKDRIKRSRTFTPPLEGIA-FEYGFNTKELDHWLKYW 390
           K K D T IKP+KV+  ++ I DLK R++ +R     LE    F YGFN+K+L     YW
Sbjct: 41  KAKPDNTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDDFYYGFNSKQLLKLRDYW 100

Query: 391 SEEYPFAERQNFLNKFPQFTTNIQGLNIHFIRVTPKVPAGVEIVPLLLVHGWPG 552
             +Y + +++  +N+FPQF T I+GL +HF+ V P   +   + P+L+ HGWPG
Sbjct: 101 LNKYDWRKQEATINQFPQFKTEIEGLQVHFLHVKPP-KSYKNVKPILVAHGWPG 153


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
 Frame = +1

Query: 97  FVFLIPALLVLSIPLYLFVLKSTPPLPDMDLDAWWGPPQHKGKQDTSIKPYKVSFGETEI 276
           F F +  + + SI L +++ K   P  ++D D +W     + K D +I  + +   E+E+
Sbjct: 5   FFFSVVVISIFSILLSIYIHKPDFPPLEIDPDDYWKLDDPE-KDDDTIYSFTIDIKESEV 63

Query: 277 KDLKDRIKRSRTFTPPLEGIAFEYGFNTKELDHWLKYWSEEYPFAERQNFLNKFPQFTTN 456
            + K++++  R F P L      Y  N     + LK     + + + Q+FLN F Q+ T 
Sbjct: 64  SNFKEKLESER-FLPTL------YDTNYDNYLNELKQVLLGFNWKQHQHFLNTFKQYKTE 116

Query: 457 IQGLNIHFIRV-TPKVPAGVEIVPLLLVHGWPG 552
           I+GL IHF+RV TP       +VPLL+ HG+PG
Sbjct: 117 IEGLKIHFLRVSTPPKDKKSRVVPLLIFHGFPG 149


>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
            protein 10, isoform b protein.
          Length = 1371

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +2

Query: 311  LSLRPSKVLPLSMASIQKN*ITGSNTGQKNTRLLKGKTSSTNSLSLQPTSR 463
            LS+  +  +P +M ++ +  +  +NT   NT   +  T++TN + ++ T +
Sbjct: 1230 LSVHSTNSMPTTMTTVNRRNMNANNTSNDNTSFAETPTANTNRVPIKETKQ 1280


>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
            protein 10, isoform a protein.
          Length = 1563

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +2

Query: 311  LSLRPSKVLPLSMASIQKN*ITGSNTGQKNTRLLKGKTSSTNSLSLQPTSR 463
            LS+  +  +P +M ++ +  +  +NT   NT   +  T++TN + ++ T +
Sbjct: 1246 LSVHSTNSMPTTMTTVNRRNMNANNTSNDNTSFAETPTANTNRVPIKETKQ 1296


>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
            molecule UNC-10 protein.
          Length = 1563

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +2

Query: 311  LSLRPSKVLPLSMASIQKN*ITGSNTGQKNTRLLKGKTSSTNSLSLQPTSR 463
            LS+  +  +P +M ++ +  +  +NT   NT   +  T++TN + ++ T +
Sbjct: 1246 LSVHSTNSMPTTMTTVNRRNMNANNTSNDNTSFAETPTANTNRVPIKETKQ 1296


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical protein
            C33B4.3b protein.
          Length = 993

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +2

Query: 206  HHNTKESRTPALSRIKYRLAKLKSKISKTASKDRELSLRPSKVLPLSMASIQKN*ITGSN 385
            ++N   S T     +K  LAK +SK++    +D E   R S+   LS+    +  +    
Sbjct: 863  NNNNNNSTTDFQMDLKNALAKRRSKVAHDVDEDEE---RESRFEGLSLRETVRENVVERG 919

Query: 386  TGQKNTRLLKGKTS--STNSLSLQPT 457
             G +N  ++  K S  +++  SL+P+
Sbjct: 920  KGIQNIGIVNKKDSGYTSSRTSLEPS 945


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
            C33B4.3a protein.
          Length = 1110

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +2

Query: 206  HHNTKESRTPALSRIKYRLAKLKSKISKTASKDRELSLRPSKVLPLSMASIQKN*ITGSN 385
            ++N   S T     +K  LAK +SK++    +D E   R S+   LS+    +  +    
Sbjct: 863  NNNNNNSTTDFQMDLKNALAKRRSKVAHDVDEDEE---RESRFEGLSLRETVRENVVERG 919

Query: 386  TGQKNTRLLKGKTS--STNSLSLQPT 457
             G +N  ++  K S  +++  SL+P+
Sbjct: 920  KGIQNIGIVNKKDSGYTSSRTSLEPS 945


>U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 151 protein.
          Length = 785

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 167 GVLLSTNKYRGIL-RTSKAGIKNTNNRRAIL*RRMFINSQVLSQF 36
           G +L +N  R +L RT  AG     NRRA++ R MF N + +  F
Sbjct: 657 GSILDSNPDRIVLKRTVLAGHPYKINRRAVVVRYMFFNREDIEWF 701


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 430 NKFPQFTTNIQGLNIHFIRVTPKVPAGVEIVPLL 531
           NK+P+F T      I F  +  +VP  V ++PL+
Sbjct: 570 NKYPEFKTTPFDTEIGFADIILQVPLVVAVIPLV 603


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 70  LRYKMARLLFVFLIPALLVLSIPLY 144
           L Y++    F F IPA+L+L++P +
Sbjct: 247 LIYQITSPTFTFYIPAILILTVPFF 271


>AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein
           protein.
          Length = 703

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 320 GVKVRDLLMRSLRSLISVSPNDTL 249
           G++ RDL + SLR  IS+ P D++
Sbjct: 495 GLETRDLTLDSLRQSISIVPQDSV 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,008,019
Number of Sequences: 27780
Number of extensions: 270905
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)