Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J14
(552 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27260.1 68415.m03276 expressed protein 31 0.51
At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containi... 29 2.1
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR... 29 2.7
At3g20860.1 68416.m02637 protein kinase family protein contains ... 28 3.6
At3g09710.1 68416.m01150 calmodulin-binding family protein low s... 28 3.6
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ... 28 4.8
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla... 27 6.3
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 27 6.3
At1g06780.1 68414.m00721 glycosyl transferase family 8 protein c... 27 6.3
At4g21480.1 68417.m03106 glucose transporter, putative similar t... 27 8.3
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 27 8.3
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 27 8.3
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 27 8.3
>At2g27260.1 68415.m03276 expressed protein
Length = 243
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 73 RYKMARLLFVFLIPALLVLSIPLYLFVLKSTPPLPDMDLDA 195
R + R LF+ LL+L + L++F L P LPD++L++
Sbjct: 55 RAVIIRRLFIVFTTFLLLLGLILFIFFLIVRPQLPDVNLNS 95
>At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 680
Score = 29.1 bits (62), Expect = 2.1
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = -2
Query: 356 LKPYSKAIPSR-GGVKVRDLLMRSLRSLISVSPNDTLYGLMLVSCFPLCCGGPHHASKSI 180
L+ YSK + G KV D L ++S T GL+ PLC GP HA+ I
Sbjct: 360 LETYSKLVSGLIKGRKVSDAL-EIFEEMLSRGVLPTT-GLVTSFLKPLCSYGPPHAAMVI 417
Query: 179 ---SGKGGVLLSTNKYRGIL-RTSKAG 111
S K G +S + Y+ +L R S+ G
Sbjct: 418 YQKSRKAGCRISESAYKLLLKRLSRFG 444
>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1145
Score = 28.7 bits (61), Expect = 2.7
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 268 TEIKDLKDRIKRSRTFTPPLEGIAFEYGFNTKELDHW-LKYWSEEYPFAERQNFLNKFPQ 444
+ I++L +K F LE GFN K LDH +Y SE L FP+
Sbjct: 668 SSIRNLNKLLKLDMEFCHSLE--ILPTGFNLKSLDHLNFRYCSE----------LRTFPE 715
Query: 445 FTTNIQGL 468
F+TNI L
Sbjct: 716 FSTNISVL 723
>At3g20860.1 68416.m02637 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 427
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +2
Query: 194 RGGVHHNTKESRTPALSRIKYRLAKLKSKISKTASKDRELSLRPSKVLPLSMAS 355
R G+ TK ++TP + + K+K + ++SKD+E RP+K +S+ S
Sbjct: 297 RTGLPPKTKSAKTPIKHNQESEETEKKNKDTSSSSKDKE---RPAKSQEMSVIS 347
>At3g09710.1 68416.m01150 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 454
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 263 AKLKSKISKTASKDRELSLRPSKVLPLSMASIQKN*ITGSNTGQKNTRLLKGKTSSTNSL 442
+ +KSK S +K E + RPS P S+ + S+T ++++ L+ S+
Sbjct: 338 SSIKSKSSDDEAKSSERNRRPSIARP----SVSDDETLSSSTARRSSNLIPTTKSARGKP 393
Query: 443 SLQPTSRV*IFT 478
Q +SRV + T
Sbjct: 394 KSQTSSRVAVTT 405
>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
gi:1654140 [Lycopersicon esculentum]
Length = 917
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 178 DMDLDAWWGPPQHKGKQDTSIKPYKVSFGETE 273
D++L AWW ++KG D +P+ T+
Sbjct: 719 DLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQ 750
>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 858
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +1
Query: 274 IKDLKDRIKRSRTFTPPLEGIAFEYGFNTKELDHWLKYWSEEYPFAERQNFLNKFPQFTT 453
I++L +K + F LE + GFN K LD F+E L FP+F+T
Sbjct: 734 IRNLNKLLKLNMAFCNSLETLPT--GFNLKSLDR--------LSFSECTK-LKTFPKFST 782
Query: 454 NIQGLNI 474
NI LN+
Sbjct: 783 NISVLNL 789
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 427 LNKFPQFTTNIQGLNIHFIRVTPKVPAGVEIVPLL 531
L FP +TNI LN+ + + +VP +E + LL
Sbjct: 827 LKTFPDISTNISDLNLSYTAI-EEVPLSIEKLSLL 860
>At1g06780.1 68414.m00721 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 589
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 205 PPQHKGKQDTSIKPYKVSFGET-EIKDLKDRIKRSRTFTPP 324
PP KG+++T ++P + + +T EI+D + K F PP
Sbjct: 132 PPLSKGEKNTRVQPDRATDVKTKEIRDKIIQAKAYLNFAPP 172
>At4g21480.1 68417.m03106 glucose transporter, putative similar to
glucose transporter (Sugar carrier) STP1, Arabidopsis
thaliana, SP|P23586; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 508
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +1
Query: 7 NAHVSFDIKIN*DNTWLLINILRYKMARL---LFVFLIPALLVLSIPLYLFVLKSTPPLP 177
+A S + +N T+L+ + + L LF+F ++V+SI +YLF L T +P
Sbjct: 421 SAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLF-LPETRGVP 479
Query: 178 DMDLDAWW 201
+++ W
Sbjct: 480 IEEMNRVW 487
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 166 PPLPDMDLDAWWGPPQHKGKQDTSIKPYKVSFGETEIKDLKDRIKRSR 309
PP+P L W P + T +KP K S E+K +++ KR R
Sbjct: 195 PPVPSPYLGFLWKVPAY---MLTWVKPKKESKRAAELKRMREDFKRQR 239
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 320 GVKVRDLLMRSLRSLISVSPNDTLYGLMLVSCFPLCCG 207
G + D +RSL S + +P+ L L L +C CCG
Sbjct: 392 GNPIEDSGIRSLISYFTKNPDSRLADLNLENCELSCCG 429
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 359 VLKPYSKAIPSRGGVKVRDLLMRSLRSLISVSPNDTLYGLML 234
+++ ++ +G +K +L RSL ++SP D L + L
Sbjct: 770 LVRTFASVESEKGKIKAMSMLCNMFRSLFALSPEDVLPAVYL 811
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,352,554
Number of Sequences: 28952
Number of extensions: 256850
Number of successful extensions: 788
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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