Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J13
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    25   6.7  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    25   6.7  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   6.7  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    24   8.9  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 253 HFVYIVTSLLPTAISLTKYVGNCQHKFVVLVCPFRTVN 366
           H   +V++LL       + V NC   F+ LVC F  V+
Sbjct: 448 HLSPMVSALLQGLTDNPRIVANCCWAFMNLVCHFAPVD 485


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 357 SKWAYENNEFVLTVPYVFGK-RYGS-WQKTCDDVNEVILTVPEAES 226
           SK A   N +   VPY   + R    W++ CD +N  I+ +P  ++
Sbjct: 46  SKKALARNRYSNIVPYENTRVRLDPMWKEACDYINASIVKIPSGKT 91


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 286 TAISLTKYVGNCQHKFVVLVCPFRTVNVEI 375
           T  +L  Y+ +C  KFV  V P ++ N+EI
Sbjct: 126 TREALFDYIADCIKKFVEEVHPGKSQNLEI 155


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 359 VRNGHTRTTNLC*QFPTYLVRDMAVGKRLVT 267
           +R+G T  T LC QFPT  +  + V    VT
Sbjct: 326 LRSGGTLETALCRQFPTVCLGKILVQINKVT 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,967
Number of Sequences: 5004
Number of extensions: 31613
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)