Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J13
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817...    27   6.6  
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375...    27   8.7  
04_04_0694 - 27311910-27312056,27314277-27314420,27315085-273151...    27   8.7  
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703...    27   8.7  

>02_02_0239 -
           8177152-8177445,8177821-8178207,8178717-8179715,
           8179799-8179953,8180725-8180812,8180901-8181004,
           8181327-8181549,8182251-8182335,8182425-8182816,
           8182852-8183097
          Length = 990

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 424 QLRFRADVLRCSSRTAVSQRLPF 356
           +LR RAD L CSSR A    + F
Sbjct: 359 ELRIRADDLHCSSRKAAKHYIEF 381


>07_01_0504 +
           3756714-3757054,3757205-3757259,3757403-3757477,
           3757638-3757729,3757914-3757995,3758138-3758221,
           3758326-3758445
          Length = 282

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 354 KWAYENNEFVLTVPYVFGKRYGSWQKTCDDVNEVILTVPEAESEFN 217
           KW +EN   ++T       R G  QKT +  N  +L VP+A  EF+
Sbjct: 209 KWEWEN---LVTACSRCNSRKG--QKTVEQANMKLLKVPKAPKEFD 249


>04_04_0694 -
           27311910-27312056,27314277-27314420,27315085-27315108,
           27315570-27315713,27316372-27316423,27316534-27316599,
           27316724-27316955,27316970-27317081
          Length = 306

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 294 YGSWQKTCDDVNEVILTV 241
           +G W+ +C+D +E+IL V
Sbjct: 142 FGDWEDSCEDEDEIILHV 159


>01_05_0540 +
           23069954-23070103,23070170-23070251,23070298-23070355,
           23071276-23071318,23072262-23073341,23073448-23073509,
           23073759-23073855,23074703-23074984,23075073-23075147,
           23075223-23075276,23075373-23075515,23076567-23076858
          Length = 805

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 339 NNEFVLTVPYVFGKRY----GSWQKTCDDVNEVILTVPEAESEFNE 214
           +  F  +  +VFGKR      SW KTC DV   I     A+SE  E
Sbjct: 292 HKNFRASPAHVFGKRQIEKARSWSKTCGDVKS-IFQGDGAQSEIAE 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,392,762
Number of Sequences: 37544
Number of extensions: 169560
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)