Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J13
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)                    28   3.9  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         27   5.1  
SB_26320| Best HMM Match : PGM_PMM_IV (HMM E-Value=10)                 27   5.1  
SB_18103| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                27   8.9  

>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 420 CDSGQMFSDVRVVPQYLNVYRSKWAYENNE 331
           CD  QMF    V P++ N  R  W +ENN+
Sbjct: 605 CDVEQMFHSFHVNPEHRNFLRFLW-FENND 633


>SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 420 CDSGQMFSDVRVVPQYLNVYRSKWAYENNEFVLTVPY 310
           CD  QMF    V P++ N  R  W   NN     + Y
Sbjct: 669 CDVEQMFHSFHVNPEHRNFLRFLWFENNNPEARIIEY 705


>SB_48276| Best HMM Match : RVT_1 (HMM E-Value=0.57)
          Length = 427

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
 Frame = -1

Query: 420 CDSGQMFSDVRVVPQYLNVYRSKWAYENNEFVLTVPYVFGKR-YGSWQKTCDDVNEVILT 244
           CD  QMF    V P + +  R  W  ENN       Y      +G+          +  T
Sbjct: 217 CDVEQMFHSFHVEPSHRDFLRFLWFEENNPEKPVTEYRMNVHLFGNGPSPAITTYGLRRT 276

Query: 243 VPEAESEFNEYDYN 202
             + E E+ E   N
Sbjct: 277 ASDGEEEYGEESKN 290


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 429 AHNCDSGQMFSDVRVVPQYLNVYRSKWAYENNEFVL 322
           A  CD   MF  VRV P+  ++ R  W +++N+F L
Sbjct: 619 AFTCDIEGMFHQVRVDPENRDLLRFIW-WKDNDFSL 653


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 420  CDSGQMFSDVRVVPQYLNVYRSKWAYENN 334
            CD  QMF    V P + +  R  W  ENN
Sbjct: 1001 CDVEQMFHSFHVEPSHRDFLRFLWFEENN 1029


>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 420 CDSGQMFSDVRVVPQYLNVYRSKWAYENN 334
           CD  QMF    V P + +  R  W  ENN
Sbjct: 670 CDVEQMFHSFHVEPSHRDFLRFLWFEENN 698


>SB_26320| Best HMM Match : PGM_PMM_IV (HMM E-Value=10)
          Length = 237

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 420 CDSGQMFSDVRVVPQYLNVYRSKWAYENN 334
           CD  QMF    V P + +  R  W  ENN
Sbjct: 118 CDVEQMFHSFHVEPSHRDFLRFLWFKENN 146


>SB_18103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 420 CDSGQMFSDVRVVPQYLNVYRSKWAYENN 334
           CD  QMF    V P + +  R  W  ENN
Sbjct: 178 CDVEQMFHSFHVEPSHRDFLRFLWFEENN 206


>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 420 CDSGQMFSDVRVVPQYLNVYRSKWAYENN 334
           CD  QMF    V P + +  R  W  ENN
Sbjct: 372 CDVEQMFHSFHVDPSHRDFLRFLWFEENN 400


>SB_53678| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 782

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 381 PQYLNVYRSKWAYENNEFVLTVPYVFGKR 295
           PQY+++Y + W  ++N   L  P   G++
Sbjct: 371 PQYVDIYSASWGPKDNGKTLAGPSSLGRK 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,708,489
Number of Sequences: 59808
Number of extensions: 223292
Number of successful extensions: 496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)