Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J13
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase f...    28   3.2  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    27   5.5  
At1g15210.1 68414.m01818 ABC transporter family protein Similar ...    27   5.5  
At5g40170.1 68418.m04875 disease resistance family protein conta...    27   7.3  
At5g02080.1 68418.m00129 DNA/panthothenate metabolism flavoprote...    27   7.3  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    26   9.7  
At1g12350.1 68414.m01427 DNA/panthothenate metabolism flavoprote...    26   9.7  

>At3g47900.1 68416.m05223 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 367

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 336 NEFVLTVPYVFGKRYGSWQKTCDDVNEVILTVPEAESEFN 217
           +  + T P+VF    G WQ TC+ V ++  T+    +E +
Sbjct: 254 HHILTTPPHVFTTVLG-WQNTCETVEDIAATLAALNTEID 292


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1568

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 336  NEFVLTVPYVFGKRYGSWQKTCDDVNEVILTVPEAESEFN 217
            +  + T P+VF    G WQ TC+ V ++  T+    +E +
Sbjct: 1454 HHILTTPPHVFTIVLG-WQNTCETVEDIAATLAALNTEID 1492


>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
            gb|Z70524 GI:1514643 PDR5-like ABC transporter from
            Spirodela polyrrhiza and is a member of the PF|00005 ABC
            transporter family. ESTs gb|N97039 and gb|T43169 come
            from this gene
          Length = 1442

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 227  DSASGTVRITSFTSSQVFCQLPYLLPNT*GTVNTNSLFSYAHFE 358
            + A+G      +  SQV C+LPY+L  T  T  +  ++S   FE
Sbjct: 1252 EKAAGMYSAIPYAISQVTCELPYVLIQT--TYYSLIIYSMVGFE 1293


>At5g40170.1 68418.m04875 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4 [Lycopersicon
           hirsutum] gi|2808683|emb|CAA05268
          Length = 792

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 435 ISAHNCDSGQMFSDVRVVPQYLNVYRSKWAYENNEFVLTVPYVFGKRY 292
           IS  +  S        ++P Y+N+     A  NN F   +P +F KRY
Sbjct: 377 ISELDLSSNAFKGSFPIIPPYVNIM----AASNNYFTGGIPLIFCKRY 420


>At5g02080.1 68418.m00129 DNA/panthothenate metabolism flavoprotein
           family protein contains Pfam domain PF04127: DNA /
           pantothenate metabolism flavoprotein
          Length = 270

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 435 ISAHNCDSGQMFSDVRV--VPQYLNVYRSKWA 346
           ++ H  +SG    D+R+  VP+ L+V RS WA
Sbjct: 151 MTEHKIESGSGPLDIRLAQVPKMLSVLRSNWA 182


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 282 ANCHISYQIR-RELSTQIRCSRMPISNGKR*DTAVRLEHRRTSALNRSCER 431
           A+C     +R RE++T+ R S + + +  + DTA R   R  +A+N +  R
Sbjct: 319 ASCAAPTGVRHREIATEARDSSVTLGSLLQRDTAARQNCRLRAAMNSTSSR 369


>At1g12350.1 68414.m01427 DNA/panthothenate metabolism flavoprotein
           family protein contains Pfam domain PF04127: DNA /
           pantothenate metabolism flavoprotein
          Length = 317

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 435 ISAHNCDSGQMFSDVRV--VPQYLNVYRSKWA 346
           ++ H  +SG    D+R+  VP+ L++ RS WA
Sbjct: 198 MTEHKIESGSGPLDIRLAQVPKMLSILRSNWA 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,014,454
Number of Sequences: 28952
Number of extensions: 149572
Number of successful extensions: 305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)