Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J12
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    28   5.1  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       28   5.1  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       28   5.1  
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    27   6.8  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U23523-5|AAC46556.1|   77|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical
           protein F52H3.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 92  ISSTCPCFPPAYIPSRLP*CPRTQLA 15
           +S +CPC  P+ IP+RL   P TQ A
Sbjct: 26  LSISCPCDNPSNIPNRLFASPPTQSA 51


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 12  CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 119
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 12  CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 119
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 12  CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 119
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = -3

Query: 198 TLTACS----ICNAFV*TKTSPRGSMPILKV--SMNFVTTSDFEYLSVF 70
           T TAC     +C  F   K++ + ++  L V  S NFV++ DFE L++F
Sbjct: 437 TQTACEFQNFVCQKFTDLKSAKKCTLNDLLVMESQNFVSSIDFEELNLF 485


>Z98866-1|CAB11558.1|  416|Caenorhabditis elegans Hypothetical
           protein Y49E10.1 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 395 NKAFMMKMTKAATDPVLMNYYGIKVTDKSMVVIDWRKGVRR 517
           +K    K+T+ + +  L  Y+  KV D    V D  + VRR
Sbjct: 14  SKPTAQKLTEESDEKTLRKYFSTKVDDAQQKVADKSQNVRR 54


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +3

Query: 117 RPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTSPRTMTTS 239
           RP     Y ++ +  T M  KW  P+ F      P   + S
Sbjct: 277 RPDYGKIYEILAAKMTSMGVKWTDPMDFDLQADKPNYFSKS 317


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 335 ITLPAPYEIYPYFFVDSHVINKAFMMKMTKAATDPVLMNYYGIKVTDKSMVV 490
           + +PA  + +    VD+H    +   + +  A +P   N + I+VTD   VV
Sbjct: 58  VNIPATRQCFTEGCVDAHSFRMSSFRQPSFVAFEPHFPNKFRIRVTDFDFVV 109


>U23523-5|AAC46556.1|   77|Caenorhabditis elegans Hypothetical
           protein F53A9.1 protein.
          Length = 77

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -2

Query: 460 PVIVHKHRVGGSFS--HLHHEGFVDDMG 383
           P  VH H  GG     H HH GF+ ++G
Sbjct: 31  PQTVHVHTDGGHHHGHHHHHHGFLHELG 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,100
Number of Sequences: 27780
Number of extensions: 271413
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)