Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J11
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    29   2.8  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    28   3.7  
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     27   6.4  
03_05_0806 + 27846204-27846497,27847309-27847683                       27   8.5  

>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
 Frame = +1

Query: 268 FCANRHFYRRFLR--WT--FLFGICGHRV---QFVADLVPDAGHRDLPTSSSHYHPHIFK 426
           +C +RHF RR  R  W    +FG  G      +      P AGHR  P    H H   F 
Sbjct: 113 YCGHRHFRRRRRRRQWDGRLVFGSSGASACCDRSAPPFPPRAGHRRRPRLHRHRHDLPFH 172

Query: 427 QYHLPLIQAL 456
              L  + A+
Sbjct: 173 ALRLDTMAAI 182


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 206 PVKAYIMSDLLKRFD--YETTNDFVQIAISIAGFYVGLFYLEYVDTEYSLWLTWF 364
           P   YI +D L R +   E   + V  A S+   YVG  YL YV    +LW +W+
Sbjct: 89  PDSPYIRADGLLRAECNVEDLLNIVDFAKSL--HYVGFLYLRYVAEPKTLW-SWY 140


>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 167 NSRAMVKTECSVRPVKAYIMSDLLKRFDYETTNDFVQIAISIAGFYV 307
           N R +  TE  +  + A + SDLL R D+E  +  V+ ++ +    V
Sbjct: 436 NCRVICDTEGLLSRIMAPMSSDLLHRIDHEVWHSVVEESMQLVALLV 482


>03_05_0806 + 27846204-27846497,27847309-27847683
          Length = 222

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 61  HALYECKLLLVPISRSVGLSGAFCYV 138
           H +Y  + LL+PIS    L G+ CY+
Sbjct: 112 HGIYLRERLLIPISNPEILQGSTCYI 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,900
Number of Sequences: 37544
Number of extensions: 212238
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)