Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J10
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    75   3e-15
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   1.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   1.6  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   1.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   2.1  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    24   4.7  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    23   6.3  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    23   6.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    23   8.3  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    23   8.3  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 74.5 bits (175), Expect = 3e-15
 Identities = 30/39 (76%), Positives = 35/39 (89%)
 Frame = +3

Query: 3   TTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRK 119
           TTVFSHAQ VV+C  C+++LCQPTGG+ARL EGCSFRRK
Sbjct: 44  TTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 49  VPQSFASPLVAELD*RKDVHLEENSIKSWRESRINFKIMFVS 174
           +P+S   P +  L     + +    +K WRES++ F + F+S
Sbjct: 454 LPRSLPRPFLLALSILLSI-ISSFLVKHWRESKVPFLVYFLS 494


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 7   RYLATH---RGLLYAQDVPQSFASPLVAELD*RKDVHLEENSIKSWRESRINF 156
           RY   H   + L Y QD   S  +P V     ++ V LEE S+K W     +F
Sbjct: 609 RYQIAHELEQELSYLQDYVFSLGNPYVEYC--KQHVKLEEESLKIWHTLESDF 659


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 230 CLDGSTFKEFVKRHSFILLETNIILKLIRLSL 135
           C DG+ F     R   +LLE  I++K  R +L
Sbjct: 667 CKDGTYFFRTTSRKQILLLEIGILIKPERYNL 698


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 112 LNEHPSVNLARPPVGWQRI 56
           LNEH ++ LARP +   RI
Sbjct: 425 LNEHETIELARPVLAQNRI 443


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 79  PPVGWQRIVEHPAHTTTL 26
           PPVGW+ IVE   ++  L
Sbjct: 102 PPVGWEPIVEESPNSQHL 119


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 100 PSVNLARPPVGWQRIVEHPAHTTT 29
           PS + ++P + W    E  A TTT
Sbjct: 307 PSYSTSQPTISWDAASESSAGTTT 330


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 42  AGCSTILCQPTGGRAR 89
           A C T LC+  G RAR
Sbjct: 167 ANCFTFLCRALGSRAR 182


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 115 LLNEHPSVNLARPPVGWQRIVEH 47
           LLN+HP V +A P   W  I E+
Sbjct: 238 LLNKHPHVVVATPGRLWSVINEN 260


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 40  AQDVPQSFASPLVAELD*RKDVHLEENSIKSWRESRINFKIMFVSN 177
           A D    F S +  +L  + +   E+N    WR  RI  ++   S+
Sbjct: 626 AHDGQLIFDSRIKGKLPYQSETETEKNCYIDWRTGRITIRVQNFSS 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,042,610
Number of Sequences: 5004
Number of extensions: 16791
Number of successful extensions: 40
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)