Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J10
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...    79   4e-16
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   3.0  
04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043     27   3.0  
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194...    26   5.2  
06_01_1204 + 10397131-10398498                                         26   5.2  
09_03_0206 + 13485420-13486439                                         25   6.8  
06_02_0005 + 10502478-10503446                                         25   6.8  
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336...    25   6.8  
04_03_0116 - 11448012-11448525,11448693-11448763,11449139-114494...    25   6.8  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +3

Query: 3   TTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRK 119
           TTVFSH+Q VVVC GC T+LCQPTGG+ARLTEGCSFRRK
Sbjct: 46  TTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRK 84


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 21  AQRVVVCAGCSTILCQPTGGRARLTEGCS 107
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


>04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043
          Length = 436

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 103 HPSVNLARPPVGWQRIVEHPAHTTTLCAWLNT 8
           HPS        GW  ++E  AH   +  WL T
Sbjct: 318 HPSTAAFLSHCGWSSVLESMAHGVPVIGWLLT 349


>07_02_0023 -
           11918735-11918827,11919139-11919231,11919320-11919484,
           11920234-11920327,11921012-11921136,11921228-11921313,
           11921786-11921864,11923777-11923857,11924153-11924260,
           11924870-11924994,11925110-11925530
          Length = 489

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 17  PRTEGCCMRRMFHNPLPAHWWPS*INGRMFI 109
           P+   CC      +P+ A+ WP  ++GR FI
Sbjct: 103 PQVLDCCKGFERPSPIQAYAWPYLLDGRDFI 133


>06_01_1204 + 10397131-10398498
          Length = 455

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 103 HPSVNLARPPVGWQRIVEHPAHTTTLCAW 17
           HPSV L     GW  + E  A    + AW
Sbjct: 332 HPSVGLFISHCGWNSVTEAAASGVPVVAW 360


>09_03_0206 + 13485420-13486439
          Length = 339

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 66  QPTGGRARLTEGCSFRR 116
           +PTGG  R   GCS+RR
Sbjct: 58  EPTGGGPRHRAGCSWRR 74


>06_02_0005 + 10502478-10503446
          Length = 322

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 103 HPSVNLARPPVGWQRIVEHPAHTTTLCAW 17
           HP+V L     GW  + E  A    L AW
Sbjct: 207 HPAVGLFLSHSGWNSVTEAAAAGVPLLAW 235


>04_03_0370 +
           15030829-15030837,15031579-15031957,15033434-15033626,
           15033859-15034102,15035383-15035445
          Length = 295

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 106 EHPSVNLARPPVGWQRIVEHPAHTTTLCAWL 14
           EH +V +     GW   +E PA    + +WL
Sbjct: 8   EHDAVGVFLTHSGWNSTLESPASGVPMLSWL 38


>04_03_0116 -
           11448012-11448525,11448693-11448763,11449139-11449421,
           11449520-11449672,11449750-11450219,11451470-11451631,
           11451718-11451987,11452229-11452633
          Length = 775

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 103 HPSVNLARPPVGWQRIVEHPAHTTTLCAW-LNTVV 2
           H S+       GW  ++E  AH   + AW LN  V
Sbjct: 655 HASIGTFLSHYGWNSVLESTAHGVPVVAWPLNAQV 689


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,790,073
Number of Sequences: 37544
Number of extensions: 107421
Number of successful extensions: 300
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)