Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J10
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...    74   2e-14
Z68752-5|CAA92984.1|  199|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    25   8.4  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    25   8.4  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 3   TTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRKQ 122
           +TVFSHA  VVVC GC+T+LCQPT G+A+LTEGCSFR+KQ
Sbjct: 44  STVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83


>Z68752-5|CAA92984.1|  199|Caenorhabditis elegans Hypothetical
           protein T12G3.5 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 100 DVHLEENSIKSWRESRINFKIMFVSNNMNE 189
           D  L++NS K W E R   K + + +N N+
Sbjct: 136 DAKLKQNSPKRWHELRKRIKYLMMQHNYNK 165


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 121 SIKSWRESRINFKIMFVSNNMNE 189
           S KSW E +IN   +  SNN NE
Sbjct: 576 SRKSWEEVKINHNNILSSNNSNE 598



 Score = 26.6 bits (56), Expect = 2.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  EGCCMRRMFHNPLPAHWWP 82
           +GCC++  +H P P+ + P
Sbjct: 402 KGCCVKDQYHEPAPSGYHP 420


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 115 LLNEHPSVNLARPPVG--WQRIVEHPAHTTTLCAWLNTVV 2
           ++N      + +PP G  W+  V H    T LC+W  +V+
Sbjct: 353 IINCGKDTEIPKPPPGHKWKE-VRHDNTVTWLCSWTESVL 391


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 115 LLNEHPSVNLARPPVG--WQRIVEHPAHTTTLCAWLNTVV 2
           ++N      + +PP G  W+  V H    T LC+W  +V+
Sbjct: 425 IINCGKDTEIPKPPPGHKWKE-VRHDNTVTWLCSWTESVL 463


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 115 LLNEHPSVNLARPPVG--WQRIVEHPAHTTTLCAWLNTVV 2
           ++N      + +PP G  W+  V H    T LC+W  +V+
Sbjct: 425 IINCGKDTEIPKPPPGHKWKE-VRHDNTVTWLCSWTESVL 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,754,354
Number of Sequences: 27780
Number of extensions: 91122
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)