Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J10
         (283 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   5.0  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    20   6.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   6.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 79  PPVGWQRIVEHPAHTTT 29
           P VGW+    HPA+  T
Sbjct: 200 PLVGWKDKRSHPAYNMT 216


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 236 LQCLDGSTFKE 204
           +QCL  S FKE
Sbjct: 2   IQCLQSSAFKE 12


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 236 LQCLDGSTFKE 204
           +QCL  S FKE
Sbjct: 55  IQCLQSSAFKE 65


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 103 VHLEENSIKSWRESR 147
           +HL E  +K W ++R
Sbjct: 46  LHLTETQVKIWFQNR 60


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 43  QDVPQSFASPLVAELD 90
           +DV  +F  PLV E++
Sbjct: 498 EDVSPTFEKPLVREIE 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,149
Number of Sequences: 438
Number of extensions: 1235
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)