Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J10
         (283 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...    77   2e-15
At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)            74   2e-14
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)            71   1e-13
At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing pr...    27   1.5  
At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing pr...    27   1.5  
At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing...    27   1.9  
At4g38190.1 68417.m05391 cellulose synthase family protein simil...    26   4.5  
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    25   7.8  
At2g16380.1 68415.m01874 SEC14 cytosolic factor family protein /...    25   7.8  
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    25   7.8  

>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +3

Query: 3   TTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRK 119
           TTVFSH+Q VVVC  C TILCQPTGG+A+LTEGCSFRRK
Sbjct: 46  TTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRK 84


>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = +3

Query: 3   TTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRK 119
           TTVFSH+Q VVVC  C T+LCQPTGG+ARL EGCSFR+K
Sbjct: 46  TTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 28/39 (71%), Positives = 34/39 (87%)
 Frame = +3

Query: 3   TTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRK 119
           TTVFSH+Q VV+C  C T+LC PTGG+A+LTEGCSFR+K
Sbjct: 46  TTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84


>At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing
           protein similar to methyl-CpG binding protein MBD4 [Mus
           musculus] GI:3800807; contains Pfam profile PF01429:
           Methyl-CpG binding domain
          Length = 272

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 91  NLARPPVGWQRIV 53
           N++RPP GWQR++
Sbjct: 124 NISRPPAGWQRLL 136


>At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing
           protein similar to methyl-CpG binding protein MBD4 [Mus
           musculus] GI:3800807; contains Pfam profile PF01429:
           Methyl-CpG binding domain
          Length = 272

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 91  NLARPPVGWQRIV 53
           N++RPP GWQR++
Sbjct: 124 NISRPPAGWQRLL 136


>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 707

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 109 LEENSIKSWRESRINFKIM 165
           L+E SI+ W+E  IN+K+M
Sbjct: 8   LKERSIEEWQEYYINYKLM 26


>At4g38190.1 68417.m05391 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit gi:2827143 from
           [Arabidopsis thaliana], cellulose synthase-5
           (gi:9622882) from Zea mays
          Length = 1111

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 112 LNEHPSVNLARPPVGWQRIVEHPAHTTTLCAWLNTV 5
           L +HP+V   RPP G  R+   P   TT+   ++ +
Sbjct: 751 LADHPAVKYGRPP-GALRVPRDPLDATTVAESVSVI 785


>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 106 HLE-ENSIKSWRESRINFKIMFVSNNMNE*RFTNSL 210
           HLE    ++SW + R NF  +  + +MN   F+NS+
Sbjct: 38  HLEYPQQLESWYDHRTNFCYLQATPSMNITCFSNSV 73


>At2g16380.1 68415.m01874 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to phosphatidylinositol
           transfer-like protein III (GI:14486705) [Lotus
           japonicus]
          Length = 547

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 195 TSLIHIIGNKHNLKINTALSPGLNAVFF 112
           TS IH++GNK+  K+  A+       FF
Sbjct: 269 TSKIHVLGNKYQPKLLEAIDASELPYFF 296


>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 121 SIKSWRESRINFKIMFVSNNMNE*RF 198
           +I  WR++RIN+  +F   + NE ++
Sbjct: 447 NIFMWRKARINYSFIFELGSKNELKY 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,447,465
Number of Sequences: 28952
Number of extensions: 86024
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)