Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J09
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   236   7e-63
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             233   6e-62
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    32   0.31 
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    29   1.7  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    29   2.2  
At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containi...    29   2.9  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   3.8  
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi...    28   3.8  
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    28   5.1  
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ...    27   6.7  
At5g07820.1 68418.m00896 expressed protein                             27   6.7  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    27   6.7  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   8.9  
At2g43795.1 68415.m05444 hypothetical protein                          27   8.9  
At1g78170.1 68414.m09109 expressed protein                             27   8.9  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    27   8.9  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  236 bits (578), Expect = 7e-63
 Identities = 121/189 (64%), Positives = 142/189 (75%), Gaps = 4/189 (2%)
 Frame = +2

Query: 17  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 196
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 197 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 370
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 371 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKDNAKPRYK 544
            ++PGLTD E PR  GPKRASKIRKLFNLKKEDDVR YV   +R    K+GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----K 176

Query: 545 APKIQRLVT 571
           APKIQRLVT
Sbjct: 177 APKIQRLVT 185


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  233 bits (570), Expect = 6e-62
 Identities = 119/189 (62%), Positives = 141/189 (74%), Gaps = 4/189 (2%)
 Frame = +2

Query: 17  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 196
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 197 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 370
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 371 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKDNAKPRYK 544
            ++PGLTD E PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK  +    K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----K 176

Query: 545 APKIQRLVT 571
           APKIQRLVT
Sbjct: 177 APKIQRLVT 185


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 386 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKDNAK 532
           + +G V ++   ++A +  K   +KKEDDVR+  +KRL  +  KE K+  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 422 KRASKIRKLFN--LKKEDDVRRYVVKRLLPA-KEGKDNAK 532
           KR + I KL +  L++ +D+R Y+V  LLP    G  NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +2

Query: 284 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 457
           G ++    RG +   + S  AL  +  GA   PG      ++P R+G  R +KIRKL  +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233

Query: 458 KKEDDVRRYVVKRLLPAKEG 517
           K + ++   ++K  LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253


>At1g61690.1 68414.m06958 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1155

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/94 (22%), Positives = 43/94 (45%)
 Frame = +2

Query: 56  KLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV 235
           K  E    +++R+   +R  AE+  +LLG + K   LR  G  D+    + Q  +  +++
Sbjct: 595 KTAEAQGAYEVRVTKPRRTKAEIQRELLGLKRKALTLRRQGNVDEAEEVLNQTQILEAQI 654

Query: 236 RLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 337
            + +  G + Y    D ++ +K       D+ L+
Sbjct: 655 -MEIDSGKNLY---ADSDQPKKRSNDLATDSRLN 684


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 374 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKE 466
           E+PGL D  V   L PK+ ++++KL   K++
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRK 650


>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
           to GF14omega isoform GI:487791 from [Arabidopsis
           thaliana]
          Length = 259

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 374 EIPGLTDGEVP---RRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKDNAKPRYK 544
           E+ G+ DG +     RL P  AS   K+F LK + D  RY+ +     +E KD A+    
Sbjct: 95  ELSGICDGILKLLDSRLIPAAASGDSKVFYLKMKGDYHRYLAE-FKTGQERKDAAEHTLA 153

Query: 545 APK 553
           A K
Sbjct: 154 AYK 156


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 131 DLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 298
           DL G E     L  AG   K+G  + + +LT   V   +SKG + + P RD +  R
Sbjct: 231 DLAGSERASQTLS-AGSRLKEGCHINRSLLTLGTVIRKLSKGKNGHIPYRDSKLTR 285


>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 561

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 434 KIRKLFNLKKEDDVRRYVVKRLLPA-KEGKDNAK 532
           +I K   LK++ D++ Y+V++LLP    G  NAK
Sbjct: 504 EILKAKTLKEKKDMKSYIVQQLLPGLVYGDSNAK 537


>At5g07820.1 68418.m00896 expressed protein
          Length = 561

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 408 RGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 298
           + TSPSVSP +       +   K  R++    P+ DL
Sbjct: 161 KSTSPSVSPVVRTVKKTNLVVNKASRISQNKSPKEDL 197


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 53  QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 148
           +KL+ EV DE KLR+ YE++       D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 182 YRRQHGEHNLSIRRLEDLHQLQRPYAFHRRYGACAHPPLQITSDIPLPGMKRSTS*LR 9
           Y+   G H    R+L+DL   Q       R  AC H P  ++S I L    R+T  LR
Sbjct: 434 YKPARGTH----RKLKDLSASQDSTKEELRILACLHGPANVSSLISLVESIRTTKILR 487


>At2g43795.1 68415.m05444 hypothetical protein
          Length = 170

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +2

Query: 266 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 445
           YR + D ER  K  +G    +++S       RKG +E   +   E+PR    KR S IRK
Sbjct: 54  YRAQLDAERAMKLSKGRNYSSDIS-------RKGRRESSQIESAEIPRGRKAKRES-IRK 105


>At1g78170.1 68414.m09109 expressed protein 
          Length = 221

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 530 LHCPCPL-WQVKGVLQHSDAHRLLFLN*IICGF*THAWDLD 411
           LH P P  WQ KG  + SD HR    + +I G    + DL+
Sbjct: 61  LHTPLPSDWQTKGYSRTSDEHRAYPKDPVIFGQPKMSLDLE 101


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 38  PATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQGFPM 205
           P   CQ +  V D  +   FYEK  G E+       E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,354
Number of Sequences: 28952
Number of extensions: 253521
Number of successful extensions: 660
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)