Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J08
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 29 0.28
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 0.65
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 1.1
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 2.0
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 26 2.6
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 4.6
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 4.6
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 4.6
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 6.1
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 8.0
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.0
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 29.5 bits (63), Expect = 0.28
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 3 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEI 182
L IF+K +++ ++ FES K+ FH ++ W++ D EEV D+QR +
Sbjct: 247 LQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDF--EEVEGDFQRICHL 304
Query: 183 VARHVLGAA 209
R ++ A
Sbjct: 305 YERCLITCA 313
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 28.3 bits (60), Expect = 0.65
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +3
Query: 168 RSYEIVARHVLGAAPKPFDKHTFMPSALD----FYQTALRDPAF-YQLYDRIVGYINAFK 332
+++E +R+V+ A P D +TF S LD + F Q +DR V Y+N +
Sbjct: 135 QTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYP 194
Query: 333 HYLKPY 350
KPY
Sbjct: 195 AGDKPY 200
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.1
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 16 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL-- 189
K+L + K + + + +T+ R+ L +T + +C K+ + I DL+ SL
Sbjct: 198 KQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPSLTC 257
Query: 190 -AMCSVQHLNHSTSTPSCPVRLTFT 261
A +Q + TS+ S PV L T
Sbjct: 258 FASDILQTVPEYTSSQSSPVLLPAT 282
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 2.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 350 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 213
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 276 DPAFYQLYDRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 425
+P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D
Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 174 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 278
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/78 (21%), Positives = 28/78 (35%)
Frame = +1
Query: 40 RKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNH 219
RK R+ ++ + + L + IC Q I L + C L H
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKH 1122
Query: 220 STSTPSCPVRLTFTKPHF 273
S+S P C +L ++
Sbjct: 1123 SSSCPMCKTKLNKNNAYY 1140
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.4 bits (53), Expect = 4.6
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 208 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYMTGLWVTLT 324
HL S STPS LTF T + T H LW L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 15 EKTFVQSLQKGKFESYGKKIDFHDEKAIN 101
EKT V+S+ K + + G DFH E A N
Sbjct: 12 EKTHVESIVKFEDSNRGTITDFHIETANN 40
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 87 EKAINFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLG 203
+K +N N W L+E+E+ + + +++ AR V G
Sbjct: 131 QKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 8.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 94 QLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTP-SCPVRL 252
+L S TI P+C++ K + +N L+L+ + L TS P CP++L
Sbjct: 228 ELNASVTISG-IPVCIRSKEKMFLNPDCALTLSFICI-FLAQYTSIPLPCPLQL 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,971
Number of Sequences: 5004
Number of extensions: 41242
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -