Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J08
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 0.72
At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 29 1.3
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 29 1.7
At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH) domain... 29 2.2
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro... 28 2.9
At5g15510.1 68418.m01816 expressed protein 27 5.1
At5g22540.1 68418.m02630 expressed protein contains Pfam profile... 27 6.7
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic... 27 6.7
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi... 27 8.9
At4g10670.1 68417.m01743 transcription elongation factor-related... 27 8.9
At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai... 27 8.9
At3g01015.1 68416.m00001 expressed protein ; expression supporte... 27 8.9
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain... 27 8.9
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 30.3 bits (65), Expect = 0.72
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 64 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 207
AR++I T+KR + P+ + +++N L+KL A C Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766
>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
PF05249: Uncharacterised protein family (UPF0187)
Length = 410
Score = 29.5 bits (63), Expect = 1.3
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +1
Query: 43 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 222
K++ + ++ KLIS +K S+ I +R + K+ L N + S S++HL H
Sbjct: 49 KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103
Query: 223 TSTPSCPVRLTFTKPHF 273
+S+PS V L+ P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 29.1 bits (62), Expect = 1.7
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Frame = +3
Query: 117 WQENADLYEEEVTKDYQ-RSYEIVARHV---LGAAPKPFD---KHTFMPSALDFYQTALR 275
W L+ EE + Y+ Y+I A + GA+ K D T+ L + +
Sbjct: 139 WIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDEELLEQ 198
Query: 276 DPAFYQLYDRIVGYI---NAFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQ 434
PA QL R++G +A+ +YL Y K F + IND ++ + FF+ S+
Sbjct: 199 LPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSR 258
Query: 435 FDATNSVFLTKK 470
DA ++ + K+
Sbjct: 259 HDAVKALNIYKR 270
>At5g57200.1 68418.m07145 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related low similarity to clathrin assembly
protein AP180 [Xenopus laevis] GI:6492344; contains Pfam
profile PF01417: ENTH domain
Length = 591
Score = 28.7 bits (61), Expect = 2.2
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Frame = +3
Query: 117 WQENADLYEEEVTKDYQ-RSYEIVARHVLGAAPKPFDKH-TFMPSALDFYQTALRDPAFY 290
W L+ EE + Y+ Y+I A + A+ H T M S D + PA
Sbjct: 139 WVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQL---PALQ 195
Query: 291 QLYDRIVGYIN---AFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQFDATN 449
QL R++G A+ +YL Y K F + IND ++ + FF+ S+ DA
Sbjct: 196 QLLYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVK 255
Query: 450 SVFLTKK 470
++ + K+
Sbjct: 256 ALNIYKR 262
>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
P450 76A2, eggplant, PIR:S38534
Length = 516
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 66 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 164
+K FH EKA G + +E ++ E +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278
>At5g15510.1 68418.m01816 expressed protein
Length = 497
Score = 27.5 bits (58), Expect = 5.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 69 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 239
+ D+ + ++F+ Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450
Query: 240 PSALDFYQTALRDPAFY 290
P + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467
>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 440
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 3 LDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 107
LD+ KTFV + + + + K F+D + + FV
Sbjct: 222 LDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256
>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
Length = 344
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 243 SALDFYQTALRDPAFYQLYDRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 422
SA ++ A+ +L ++ +A KH+ P P + GV +N V V F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240
Query: 423 DYSQFDATNSVFLTK 467
YS ++++ S LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255
>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 904
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 309 QSCHIADRMQGLEVRFGKSQAHW 241
Q C + D++Q L R KS HW
Sbjct: 640 QKCDLQDKLQHLYYRIRKSGIHW 662
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +1
Query: 10 FLKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL 189
+LK +S+ +S+ + +++ S ++ + +RT + ++KLQ + N+ LSL
Sbjct: 61 YLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIVRNNSKPLSL 120
Query: 190 A 192
+
Sbjct: 121 S 121
>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 239
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 37 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIIND-LMKLSL 189
++K NR ++ + + ++ T+G + IC + I ND L+KL+L
Sbjct: 155 FKKTCQNRTEDEINLRRRALIDVANTLGYHSTICKANMTKEITNDVLVKLNL 206
>At3g01015.1 68416.m00001 expressed protein ; expression supported
by MPSS
Length = 488
Score = 26.6 bits (56), Expect = 8.9
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 69 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 239
+ D+ + IN V Y E L EEE + ++ E+V + A P P+ F+
Sbjct: 387 EFDYQVTEKINLVEQYKTERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 440
Query: 240 PSALDFYQTALRDPAF 287
P + + T RDP F
Sbjct: 441 PKRSNKHPTVPRDPKF 456
>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein similar to unknown protein
GI:4262226 from [Arabidopsis thaliana] contains Pfam
profile PF00564: PB1 domain
Length = 272
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 339 LKPYPQEK-LHFVGVKINDVVVEKLVTFFDY 428
+ P P EK LH++G + V+V + ++F D+
Sbjct: 21 IMPLPPEKSLHYIGGETRLVIVPRGISFLDF 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,183,548
Number of Sequences: 28952
Number of extensions: 205445
Number of successful extensions: 569
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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