Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J07
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        33   0.30 
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)                      28   6.4  
SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14)                 28   8.5  

>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 38   DHVPIHTPEGIDILGRLIEAGVASPNVQYYKD 133
            D  P+HT EG DI  ++  +G     V++YKD
Sbjct: 1069 DKTPVHTVEGSDITMKVAVSGTPRTEVEWYKD 1100


>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 121 LNIRRSNTGFDKTAKNIDALRSMNGNMITSAVNDITIF 8
           L++   NTG  KTA+++   RS  G    S V D ++F
Sbjct: 242 LSLAAPNTGMSKTARSVRIQRSARGWSRLSVVPDESVF 279


>SB_55736| Best HMM Match : NACHT (HMM E-Value=3.2e-14)
          Length = 696

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 233 LEHYQTALTDPAFYMIWKRVLKMFSLLHQRLPEYKEEELALPDVAXQKVEVDXL 394
           LE Y T        M+ + V K    L +++PEY  E +A  D+    + +  L
Sbjct: 347 LEFYHTVNRYDLAMMVGRNVAKAVESLARKVPEYPPERIATFDMDANSIALKLL 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,864,774
Number of Sequences: 59808
Number of extensions: 385544
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)