Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J04
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 107 8e-24
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 42 6e-04
02_01_0716 + 5348720-5349115 30 1.5
12_01_0112 - 860330-861946 30 2.0
02_05_0218 + 26860319-26862448 30 2.0
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 28 6.0
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 28 7.9
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 28 7.9
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 107 bits (257), Expect = 8e-24
Identities = 60/135 (44%), Positives = 88/135 (65%)
Frame = +2
Query: 11 MSSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVG 190
+S++ STA A V K V + +GPYSQAI ++ +++SGVLG++
Sbjct: 44 VSASLSTAAA-AVKKEAVQTEKAPAALGPYSQAIKANNMVFVSGVLGLN----------- 91
Query: 191 AQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQV 370
+V++N+ +++A G S SV+KTTI+LA++ DF+ VN+IYA+YFP PAR+TYQV
Sbjct: 92 ---PEVMKNMGEILKASGASYSSVVKTTIMLADLQDFKKVNEIYAKYFPAPAPARSTYQV 148
Query: 371 TKLPLNAAVEIEAIA 415
LPLNA +EIE IA
Sbjct: 149 AALPLNARIEIECIA 163
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 89 VGPYSQAILSDKTLYISGVLGMDRDA-QLVSGGVGAQTRQVLENLKHVVEAGGGSLES 259
+GPYSQA L + LY++G LG+D +L GG A+ L N + V A G S+ S
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCSIFS 927
>02_01_0716 + 5348720-5349115
Length = 131
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 243 PPASTTCFKFSKTWRVCAPTPPDTNCASRSMPS 145
PP S T S TW PTPP + A+ S P+
Sbjct: 39 PPRSKTATAASLTWTSMVPTPPPLSGAASSGPT 71
>12_01_0112 - 860330-861946
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 152 MDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKT 271
++RD+ SGG ++R+ + ++ GGG++++V KT
Sbjct: 284 VERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKT 323
>02_05_0218 + 26860319-26862448
Length = 709
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 182 GVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPK-NCPARA 358
GVG Q L+ L H AGG +L ++K T ++ + + + R
Sbjct: 465 GVGGQWASFLQELAHRRGAGGMAL-PLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRI 523
Query: 359 TYQVTKLPLNAAVEIEAIALSGDLVITEAGPCPCA 463
++ + L+A E I+ SGD V+ + P C+
Sbjct: 524 PFEFNAVSLDAFNPAELISSSGDEVVAVSLPVGCS 558
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 158 DPCRVLPIYRESCQIKWLDCRVQPVYRHLGMLQWSS 51
DPCR L + +ES Q W++ + Y+ LG S
Sbjct: 435 DPCRFLEVIKESMQSLWIE--IVKKYQKLGFCSTKS 468
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 164 AQLVSGGVGAQTRQVLENLKHVVEAGGGS 250
AQ V GG G + + + N VEAGGGS
Sbjct: 75 AQAVVGGGGEKAKDLNNNAAPRVEAGGGS 103
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -1
Query: 227 HASSFLKLGASVLPLHQIPTAHHDPCRVLPIYRESC 120
H + +L++ +++IP+ DP + +P+ R+ C
Sbjct: 227 HNNDYLEICRCYKSIYEIPSIKEDPSKWIPVLRKIC 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,860,021
Number of Sequences: 37544
Number of extensions: 385497
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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