Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J03
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905...    29   2.9  
01_07_0278 - 42440405-42440515,42440765-42440830,42440995-424410...    28   5.1  
10_02_0030 + 4350970-4351165,4351502-4351723,4351889-4352502           28   6.7  

>03_04_0228 -
           18989688-18989807,18990300-18990345,18990452-18990552,
           18990624-18990702,18990788-18990868,18991440-18991502,
           18994171-18994246,18994980-18995246,18995994-18996076,
           18996792-18996922,18997043-18997174
          Length = 392

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 67  LRWCFKCWRSEVYNKTSCVPAAAPAFHIIFTAF 165
           LR+ FKC R     + +  P  A AFH I+  F
Sbjct: 250 LRYAFKCHRKSEAGRDTVYPVNAIAFHPIYGTF 282


>01_07_0278 -
           42440405-42440515,42440765-42440830,42440995-42441085,
           42441342-42441496,42441823-42442044,42442097-42442210,
           42442833-42442912,42443289-42443505
          Length = 351

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 52  HSMSSLRWCFKCWRSEVYNKTSCVPAAAPAFH 147
           HS S +   F CW+ +   KT  V +  PA++
Sbjct: 160 HSCSGITGVFLCWKVDELEKTILVASRDPAYY 191


>10_02_0030 + 4350970-4351165,4351502-4351723,4351889-4352502
          Length = 343

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 305 RVLIKNLQKLRYVTLERSLSCIHSYLLRKKKLTLQTDTSI 424
           R+ +K+  + RY+ L+  + C H  ++ K++ +L+T   I
Sbjct: 64  RICLKSGIEKRYIHLDEEIICAHPNIIDKQQPSLETRVEI 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,785,720
Number of Sequences: 37544
Number of extensions: 246709
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)