Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J03
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical p...    29   3.5  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical
           protein F19F10.11b protein.
          Length = 868

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 434 INKLLKCLFVMSIFFFLIDMNVYTIGSVQVLRNATFGDF*LKLFKI 297
           +N L +CL + S+F   + +N    G+  ++ +ATF D  + +FKI
Sbjct: 457 MNFLKRCLELSSLFLDTVILNYEDFGNATIITSATFIDLKV-IFKI 501


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
           protein F19F10.11a protein.
          Length = 1121

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 434 INKLLKCLFVMSIFFFLIDMNVYTIGSVQVLRNATFGDF*LKLFKI 297
           +N L +CL + S+F   + +N    G+  ++ +ATF D  + +FKI
Sbjct: 457 MNFLKRCLELSSLFLDTVILNYEDFGNATIITSATFIDLKV-IFKI 501


>Z68299-5|CAI46584.1|  111|Caenorhabditis elegans Hypothetical
           protein T04B2.8 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 592 VKTRYFRKTF*CIFLGYLVF 533
           + T YF   F C FLGYLVF
Sbjct: 11  LNTFYFNLVFLCGFLGYLVF 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,136
Number of Sequences: 27780
Number of extensions: 265986
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)